Project name: ad9ec4a185ef734

Status: done

Started: 2026-02-24 16:48:41
Chain sequence(s) A: GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:04)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:04)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:04)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:04)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:07)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:14:45)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/ad9ec4a185ef734/tmp/folded.pdb                (00:14:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:21:44)
Show buried residues

Minimal score value
-4.3269
Maximal score value
1.9791
Average score
-0.7939
Total score value
-392.1758

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
2 G A -0.5344
3 V A -0.1766
4 N A -0.4792
5 A A 0.0000
6 V A 0.0000
7 H A 0.0000
8 W A 0.0000
9 F A 0.0000
10 R A 0.0000
11 K A -0.3528
12 G A 0.0000
13 L A 0.0000
14 R A 0.0000
15 L A 0.0000
16 H A 0.0000
17 D A 0.0000
18 N A 0.0000
19 P A -1.1945
20 A A 0.0000
21 L A 0.0000
22 K A -1.8704
23 E A -2.2831
24 C A 0.0000
25 I A 0.0000
26 Q A -2.2501
27 G A -1.5089
28 A A 0.0000
29 D A -0.9370
30 T A -0.2804
31 I A 0.0000
32 R A 0.0072
33 C A 0.0000
34 V A 0.0000
35 Y A 0.1630
36 I A -0.0389
37 L A 0.0000
38 D A 0.1838
39 P A 0.4016
40 W A 1.4179
41 F A 1.2321
42 A A 0.4918
43 G A -0.0498
44 S A 0.1604
45 S A 0.0803
46 N A -0.6581
47 V A -0.2817
48 G A -0.2009
49 I A 0.1446
50 N A -0.2836
51 R A -0.3061
52 W A 0.0000
53 R A -0.2476
54 F A 0.0000
55 L A 0.0000
56 L A 0.0000
57 Q A -1.1526
58 C A 0.0000
59 L A 0.0000
60 E A -2.0148
61 D A -1.4845
62 L A 0.0000
63 D A 0.0000
64 A A -1.6257
65 N A -1.7443
66 L A 0.0000
67 R A -3.1160
68 K A -2.9691
69 L A -2.0496
70 N A -2.1304
71 S A 0.0000
72 R A 0.0000
73 L A 0.0000
74 F A 0.0000
75 V A 0.0000
76 I A -0.3481
77 R A -0.9227
78 G A -0.6199
79 Q A -0.9210
80 P A -0.8050
81 A A -1.0236
82 D A -2.0083
83 V A 0.0000
84 F A 0.0000
85 P A -2.0561
86 R A -3.3065
87 L A 0.0000
88 F A 0.0000
89 K A -3.6267
90 E A -3.5253
91 W A 0.0000
92 N A -2.6630
93 I A 0.0000
94 T A -1.1259
95 K A -0.9337
96 L A 0.0000
97 S A 0.0000
98 I A 0.0000
99 E A 0.0000
100 Y A -0.1850
101 D A 0.0000
102 S A 0.0000
103 E A 0.0000
104 P A 0.0000
105 F A 0.5614
106 G A 0.0000
107 K A -1.1189
108 E A -1.7542
109 R A -1.2114
110 D A 0.0000
111 A A -1.5621
112 A A -1.4093
113 I A 0.0000
114 K A -2.0710
115 K A -2.4712
116 L A -1.4762
117 A A 0.0000
118 T A -2.1848
119 E A -2.4332
120 A A -1.9825
121 G A -1.6917
122 V A 0.0000
123 E A -1.9254
124 V A -0.9323
125 I A -0.6206
126 V A -0.4332
127 R A -1.2867
128 I A -0.3566
129 S A 0.0000
130 H A -0.3385
131 T A 0.0000
132 L A 0.0000
133 Y A 0.0000
134 D A -2.2738
135 L A 0.0000
136 D A -3.5175
137 K A -2.9612
138 I A 0.0000
139 I A 0.0000
140 E A -3.0162
141 L A -1.6187
142 N A -1.7222
143 G A -1.6518
144 G A -2.1222
145 Q A -2.1937
146 P A -1.5251
147 P A 0.0000
148 L A 0.0879
149 T A -0.4281
150 Y A -0.9939
151 K A -2.2869
152 R A -2.0900
153 F A 0.0000
154 Q A -1.4552
155 T A -1.4387
156 L A 0.0000
157 V A 0.0000
158 S A -1.3851
159 K A -2.1805
160 M A -1.9215
161 E A -2.5236
162 P A -1.5834
163 L A -0.9314
164 E A -1.5333
165 M A 0.0040
166 P A -0.2771
167 A A -1.1509
168 D A -1.7501
169 T A -1.1763
170 I A 0.0000
171 T A -1.1420
172 S A -1.5673
173 D A -2.0333
174 V A -1.4138
175 I A -1.2774
176 G A -1.8671
177 K A -2.1904
178 C A 0.0000
179 M A -0.0175
180 T A 0.0000
181 P A 0.3787
182 L A 0.1256
183 S A -1.8413
184 D A -3.2410
185 D A -4.1525
186 H A 0.0000
187 D A -4.0172
188 E A -4.3269
189 K A -3.8344
190 Y A 0.0000
191 G A -2.1434
192 V A -1.1673
193 P A 0.0000
194 S A -1.4887
195 L A 0.0000
196 E A -3.2671
197 E A -2.8432
198 L A -1.3717
199 G A -1.6812
200 F A -1.6928
201 D A -2.7309
202 T A -1.9167
203 D A -2.4734
204 G A -1.3344
205 L A -0.6728
206 S A -0.3885
207 S A -0.0266
208 A A 0.0449
209 V A 0.4656
210 W A 0.0000
211 P A -0.1438
212 G A -0.5869
213 G A 0.0000
214 E A 0.0000
215 T A -0.1574
216 E A -0.3532
217 A A 0.0000
218 L A -0.0209
219 T A -0.6014
220 R A 0.0000
221 L A 0.0000
222 E A -1.9859
223 R A -2.1035
224 H A -1.5464
225 L A -1.2434
226 E A -1.2591
227 R A -1.1813
228 K A -0.7269
229 A A 0.2238
230 W A 1.3882
231 V A 1.5685
232 A A 0.4061
233 N A -0.8620
234 F A -1.3764
235 E A -3.1456
236 R A -3.5344
237 P A -2.5052
238 R A -2.7345
239 M A -1.7769
240 N A -1.8722
241 A A -1.5955
242 N A -1.6222
243 S A -1.1799
244 L A 0.0000
245 L A -0.1684
246 A A 0.0694
247 S A -0.2830
248 P A -0.5889
249 T A -1.0442
250 G A -0.3340
251 L A 0.0000
252 S A -0.3480
253 P A 0.0000
254 Y A 0.0000
255 L A 0.0000
256 R A -0.3560
257 F A 0.0000
258 G A 0.0000
259 C A 0.0000
260 L A 0.0000
261 S A 0.0000
262 C A 0.0000
263 R A 0.0000
264 L A 0.4482
265 F A 0.0000
266 Y A -0.1212
267 F A -0.1046
268 K A -1.0109
269 L A 0.0000
270 T A -1.4753
271 D A -2.8821
272 L A -1.9738
273 Y A 0.0000
274 K A -3.4965
275 K A -3.3810
276 V A -2.0075
277 K A -3.0313
278 K A -3.6371
279 N A -3.0258
280 S A -2.0337
281 S A -1.1223
282 P A -1.1744
283 P A -0.3359
284 L A -0.0724
285 S A -0.9642
286 L A 0.0000
287 Y A 0.0000
288 G A -1.2173
289 Q A -1.6511
290 L A 0.0000
291 L A 0.0000
292 W A -0.0222
293 R A -0.2404
294 E A 0.0000
295 F A 0.0000
296 F A 0.0000
297 Y A 0.0000
298 T A 0.0000
299 A A 0.0000
300 A A 0.0000
301 T A 0.0000
302 N A -1.9653
303 N A 0.0000
304 P A -1.1170
305 R A -2.2968
306 F A 0.0000
307 D A -1.4067
308 K A -1.9727
309 M A -1.6371
310 E A -2.4875
311 G A -1.8684
312 N A 0.0000
313 P A -1.0655
314 I A -0.1958
315 C A 0.0000
316 V A 0.0000
317 Q A -1.3871
318 I A 0.0000
319 P A -0.6684
320 W A -0.9159
321 D A -1.8051
322 K A -2.6787
323 N A -2.1608
324 P A -2.0031
325 E A -2.4130
326 A A -1.6577
327 L A -1.4205
328 A A -1.6532
329 K A -2.0509
330 W A 0.0000
331 A A -1.7091
332 E A -2.4336
333 G A 0.0000
334 R A -1.9427
335 T A 0.0000
336 G A 0.0000
337 F A 0.0000
338 P A 0.0000
339 W A 0.0000
340 I A 0.0000
341 D A 0.0000
342 A A 0.0000
343 I A 0.0000
344 M A 0.0000
345 T A -1.1554
346 Q A 0.0000
347 L A 0.0000
348 R A -1.8180
349 Q A -1.4535
350 E A 0.0000
351 G A 0.0000
352 W A -0.2476
353 I A 0.0000
354 H A -0.3838
355 H A -0.7770
356 L A -0.1792
357 A A 0.0000
358 R A -0.5657
359 H A -0.4080
360 A A 0.0000
361 V A 0.0000
362 A A 0.0000
363 C A 0.0000
364 F A 0.0000
365 L A 0.0000
366 T A 0.0000
367 R A 0.0000
368 G A 0.0000
369 D A 0.0000
370 L A -0.1468
371 W A 0.0000
372 I A 0.0000
373 S A -0.8180
374 W A 0.0000
375 E A -1.2228
376 E A -1.5869
377 G A 0.0000
378 M A -1.2859
379 K A -2.1473
380 V A -1.4544
381 F A 0.0000
382 E A -1.5168
383 E A -1.2350
384 L A 0.0000
385 L A 0.0000
386 L A 0.0000
387 D A -0.3109
388 A A 0.0000
389 D A 0.0000
390 W A 0.1366
391 S A 0.0000
392 I A 0.3388
393 N A 0.0000
394 A A 0.0000
395 G A 0.0000
396 S A 0.0604
397 W A 0.0000
398 M A 0.0000
399 W A 0.3187
400 L A 0.0000
401 S A 0.0000
402 C A 0.0000
403 S A 0.0000
404 S A 0.0000
405 F A 0.0000
406 F A 1.9791
407 Q A 0.9529
408 Q A 0.5389
409 F A 1.6992
410 F A 0.7822
411 H A -0.1720
412 C A 0.1227
413 Y A 0.2209
414 C A 0.3238
415 P A 0.0000
416 V A -0.0210
417 G A 0.0000
418 F A -0.3441
419 G A 0.0000
420 R A -1.8937
421 R A -2.3433
422 T A -1.6009
423 D A 0.0000
424 P A -2.1559
425 N A -2.5411
426 G A 0.0000
427 D A -3.1020
428 Y A 0.0000
429 I A 0.0000
430 R A -2.5111
431 R A -2.6069
432 Y A 0.0000
433 L A 0.0000
434 P A -1.0402
435 V A -0.5704
436 L A 0.0000
437 R A -2.5482
438 G A -1.3380
439 F A 0.0000
440 P A -1.0905
441 A A -1.8836
442 K A -2.1506
443 Y A -1.1672
444 I A 0.0000
445 Y A 0.0000
446 D A -0.8725
447 P A 0.0000
448 W A -1.0150
449 N A -1.5596
450 A A 0.0000
451 P A -1.4268
452 E A -2.1418
453 G A -1.2399
454 I A -0.4970
455 Q A -1.4102
456 K A -1.8822
457 V A 0.1883
458 A A -0.9855
459 K A -1.9364
460 C A 0.0000
461 L A -0.4732
462 I A 0.0000
463 G A -0.3136
464 V A 0.9800
465 N A -0.3802
466 Y A 0.0000
467 P A -1.0306
468 K A -1.6743
469 P A -1.1189
470 M A -0.6414
471 V A -0.7084
472 N A -1.6816
473 H A -1.2099
474 A A -1.5182
475 E A -2.4221
476 A A -1.2569
477 S A 0.0000
478 R A -1.8349
479 L A -0.2488
480 N A 0.0000
481 I A -0.3162
482 E A -1.7718
483 R A -1.5574
484 M A 0.0000
485 K A -2.0126
486 Q A -2.6254
487 I A 0.0000
488 Y A -1.4713
489 Q A -2.4322
490 Q A -2.4053
491 L A -1.7251
492 S A -1.9028
493 R A -2.6733
494 Y A -1.7870
495 R A -2.4074
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.683 4.6106 View CSV PDB
4.5 -0.7426 4.6106 View CSV PDB
5.0 -0.8162 4.6106 View CSV PDB
5.5 -0.8898 4.6106 View CSV PDB
6.0 -0.9475 4.6106 View CSV PDB
6.5 -0.9772 4.6106 View CSV PDB
7.0 -0.9776 4.6106 View CSV PDB
7.5 -0.9573 4.6106 View CSV PDB
8.0 -0.9252 4.6106 View CSV PDB
8.5 -0.8849 4.6106 View CSV PDB
9.0 -0.8363 4.6106 View CSV PDB