| Chain sequence(s) |
C: NLLTSYEGSFKIQLILAKLELAKAPSQPLSQRNEELKRVEQRQDRLFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVDSG
input PDB |
| Selected Chain(s) | C |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:14)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:14)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:14)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:14)
[INFO] FoldX: Starting FoldX energy minimization (00:00:14)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:03:10)
[INFO] Main: Simulation completed successfully. (00:03:11)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 4 | N | C | -0.7266 | |
| 5 | L | C | 0.4038 | |
| 6 | L | C | 0.0000 | |
| 7 | T | C | -0.4309 | |
| 8 | S | C | -0.3213 | |
| 9 | Y | C | -0.3506 | |
| 10 | E | C | -0.8003 | |
| 11 | G | C | -0.7000 | |
| 12 | S | C | -0.4437 | |
| 13 | F | C | 0.0000 | |
| 14 | K | C | -0.4209 | |
| 15 | I | C | 1.4208 | |
| 16 | Q | C | 0.4605 | |
| 17 | L | C | 0.0000 | |
| 18 | I | C | 1.8041 | |
| 19 | L | C | 1.5030 | |
| 20 | A | C | 0.0000 | |
| 21 | K | C | 0.0383 | |
| 22 | L | C | 1.2040 | |
| 23 | E | C | 0.0000 | |
| 24 | L | C | 0.0000 | |
| 25 | A | C | -0.3412 | |
| 26 | K | C | -1.3343 | |
| 27 | A | C | 0.0000 | |
| 28 | P | C | -0.6752 | |
| 29 | S | C | -0.8010 | |
| 30 | Q | C | -1.0504 | |
| 31 | P | C | -0.5074 | |
| 32 | L | C | 0.0607 | |
| 33 | S | C | -0.9785 | |
| 34 | Q | C | -1.9547 | |
| 35 | R | C | -2.4104 | |
| 36 | N | C | -2.5493 | |
| 37 | E | C | -3.5726 | |
| 38 | E | C | 0.0000 | |
| 39 | L | C | -2.3768 | |
| 40 | K | C | -3.5879 | |
| 41 | R | C | -3.3100 | |
| 42 | V | C | 0.0000 | |
| 43 | E | C | -3.7386 | |
| 44 | Q | C | -3.5683 | |
| 45 | R | C | -2.9662 | |
| 46 | Q | C | 0.0000 | |
| 47 | D | C | -3.5906 | |
| 48 | R | C | -3.3886 | |
| 49 | L | C | 0.0000 | |
| 50 | F | C | -2.2735 | |
| 51 | D | C | -3.3186 | |
| 52 | L | C | 0.0000 | |
| 53 | L | C | 0.0000 | |
| 54 | D | C | -2.7257 | |
| 55 | Q | C | -1.6274 | |
| 56 | M | C | 0.0000 | |
| 57 | D | C | -1.7356 | |
| 58 | V | C | -0.3584 | |
| 59 | E | C | -0.6179 | |
| 60 | V | C | 0.0000 | |
| 61 | N | C | -2.3789 | |
| 62 | N | C | -1.4069 | |
| 63 | S | C | -0.5544 | |
| 64 | I | C | 0.3655 | |
| 65 | G | C | -1.6905 | |
| 66 | D | C | -2.9839 | |
| 67 | A | C | -2.5885 | |
| 68 | S | C | -2.3103 | |
| 69 | E | C | -3.4296 | |
| 70 | R | C | -3.5216 | |
| 71 | A | C | -1.8916 | |
| 72 | T | C | -1.7284 | |
| 73 | Y | C | -1.8696 | |
| 74 | K | C | -2.2190 | |
| 75 | A | C | -2.1089 | |
| 76 | K | C | -2.2075 | |
| 77 | L | C | 0.0000 | |
| 78 | R | C | -3.6887 | |
| 79 | E | C | -3.7584 | |
| 80 | W | C | -2.7406 | |
| 81 | K | C | -3.2426 | |
| 82 | K | C | -3.5413 | |
| 83 | T | C | -2.3765 | |
| 84 | I | C | 0.0000 | |
| 85 | Q | C | -2.8260 | |
| 86 | S | C | -2.2003 | |
| 87 | D | C | -1.9930 | |
| 88 | I | C | 0.0000 | |
| 89 | K | C | -3.1520 | |
| 90 | R | C | -3.1802 | |
| 91 | P | C | -1.8109 | |
| 92 | L | C | 0.0000 | |
| 93 | Q | C | -1.9245 | |
| 94 | S | C | -1.3176 | |
| 95 | L | C | -0.3353 | |
| 96 | V | C | 0.0244 | |
| 97 | D | C | -1.4556 | |
| 98 | S | C | -0.8778 | |
| 99 | G | C | -0.5671 |