Chain sequence(s) |
A: SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKGGGGSGGGGSDDDDKIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] PDB-Info: The input structure is globular. Max score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:02) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:08:27) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/b088053f43f22bc/tmp/folded.pdb (00:08:27) [INFO] Main: Simulation completed successfully. (00:11:00) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | S | A | -0.8842 | |
2 | P | A | 0.0000 | |
3 | I | A | -0.5262 | |
4 | L | A | 0.0000 | |
5 | G | A | 0.0000 | |
6 | Y | A | 0.0000 | |
7 | W | A | -0.5439 | |
8 | K | A | -1.0532 | |
9 | I | A | 0.0000 | |
10 | K | A | 0.0000 | |
11 | G | A | 0.0000 | |
12 | L | A | 0.5165 | |
13 | V | A | 0.0000 | |
14 | Q | A | 0.0000 | |
15 | P | A | 0.0000 | |
16 | T | A | 0.0000 | |
17 | R | A | 0.0000 | |
18 | L | A | 0.0000 | |
19 | L | A | 0.0000 | |
20 | L | A | 0.0000 | |
21 | E | A | -1.4227 | |
22 | Y | A | -0.8258 | |
23 | L | A | -0.9726 | |
24 | E | A | -2.2538 | |
25 | E | A | -1.9672 | |
26 | K | A | -2.4208 | |
27 | Y | A | -1.5656 | |
28 | E | A | -1.5183 | |
29 | E | A | -1.0460 | |
30 | H | A | -0.5448 | |
31 | L | A | -0.4928 | |
32 | Y | A | 0.0000 | |
33 | E | A | -2.7470 | |
34 | R | A | -3.6472 | |
35 | D | A | -3.7026 | |
36 | E | A | -3.4463 | |
37 | G | A | -3.3462 | |
38 | D | A | -4.1246 | |
39 | K | A | -4.0788 | |
40 | W | A | 0.0000 | |
41 | R | A | -3.9403 | |
42 | N | A | -3.4180 | |
43 | K | A | -2.4856 | |
44 | K | A | -1.7207 | |
45 | F | A | -0.1178 | |
46 | E | A | -1.6153 | |
47 | L | A | -0.8891 | |
48 | G | A | -1.0366 | |
49 | L | A | 0.0000 | |
50 | E | A | -0.9854 | |
51 | F | A | 0.6134 | |
52 | P | A | -0.6121 | |
53 | N | A | -1.2327 | |
54 | L | A | -0.4255 | |
55 | P | A | 0.0000 | |
56 | Y | A | 0.0000 | |
57 | Y | A | 0.0000 | |
58 | I | A | -0.3629 | |
59 | D | A | -0.8061 | |
60 | G | A | -1.4062 | |
61 | D | A | -2.0375 | |
62 | V | A | -0.8877 | |
63 | K | A | -1.1129 | |
64 | L | A | -0.5497 | |
65 | T | A | -0.7003 | |
66 | Q | A | -0.9782 | |
67 | S | A | 0.0000 | |
68 | M | A | -0.2478 | |
69 | A | A | -0.3726 | |
70 | I | A | 0.0000 | |
71 | I | A | 0.0000 | |
72 | R | A | -1.0594 | |
73 | Y | A | -0.9645 | |
74 | I | A | 0.0000 | |
75 | A | A | 0.0000 | |
76 | D | A | -2.9176 | |
77 | K | A | -2.4621 | |
78 | H | A | -2.0643 | |
79 | N | A | -2.4489 | |
80 | M | A | -1.6900 | |
81 | L | A | -1.8177 | |
82 | G | A | -2.2145 | |
83 | G | A | -1.5336 | |
84 | C | A | -1.4692 | |
85 | P | A | -2.0188 | |
86 | K | A | -3.1461 | |
87 | E | A | -3.3371 | |
88 | R | A | -2.5100 | |
89 | A | A | -1.8657 | |
90 | E | A | -2.2038 | |
91 | I | A | 0.0000 | |
92 | S | A | -0.8693 | |
93 | M | A | -0.2523 | |
94 | L | A | 0.0000 | |
95 | E | A | 0.0000 | |
96 | G | A | -0.5435 | |
97 | A | A | -0.4485 | |
98 | V | A | 0.0000 | |
99 | L | A | -0.4504 | |
100 | D | A | -1.5474 | |
101 | I | A | 0.0000 | |
102 | R | A | 0.0000 | |
103 | Y | A | -0.3763 | |
104 | G | A | -1.0055 | |
105 | V | A | 0.0000 | |
106 | S | A | -0.4968 | |
107 | R | A | -1.4940 | |
108 | I | A | 0.0000 | |
109 | A | A | 0.0000 | |
110 | Y | A | -0.5017 | |
111 | S | A | -1.6883 | |
112 | K | A | -2.6422 | |
113 | D | A | -2.9877 | |
114 | F | A | 0.0000 | |
115 | E | A | -2.9006 | |
116 | T | A | -1.8588 | |
117 | L | A | -1.4997 | |
118 | K | A | -1.4704 | |
119 | V | A | 0.0000 | |
120 | D | A | -2.2546 | |
121 | F | A | 0.0000 | |
122 | L | A | 0.0000 | |
123 | S | A | -2.0203 | |
124 | K | A | -2.6331 | |
125 | L | A | 0.0000 | |
126 | P | A | 0.0000 | |
127 | E | A | -2.4974 | |
128 | M | A | -1.3790 | |
129 | L | A | 0.0000 | |
130 | K | A | -2.1483 | |
131 | M | A | -0.9950 | |
132 | F | A | 0.0000 | |
133 | E | A | 0.0000 | |
134 | D | A | -1.9803 | |
135 | R | A | -1.5897 | |
136 | L | A | 0.0000 | |
137 | C | A | -1.1100 | |
138 | H | A | -1.9362 | |
139 | K | A | -2.5795 | |
140 | T | A | -1.7320 | |
141 | Y | A | -1.3865 | |
142 | L | A | 0.0000 | |
143 | N | A | -1.6995 | |
144 | G | A | -2.0348 | |
145 | D | A | -2.7716 | |
146 | H | A | -2.0764 | |
147 | V | A | 0.0000 | |
148 | T | A | -0.5879 | |
149 | H | A | 0.0000 | |
150 | P | A | 0.0000 | |
151 | D | A | 0.0000 | |
152 | F | A | 0.0000 | |
153 | M | A | 0.0000 | |
154 | L | A | 0.0000 | |
155 | Y | A | 0.0000 | |
156 | D | A | 0.0000 | |
157 | A | A | 0.0000 | |
158 | L | A | 0.0000 | |
159 | D | A | -0.3384 | |
160 | V | A | 0.0000 | |
161 | V | A | 0.0000 | |
162 | L | A | 0.0000 | |
163 | Y | A | -0.2152 | |
164 | M | A | 0.0000 | |
165 | D | A | 0.0000 | |
166 | P | A | 0.0000 | |
167 | M | A | 0.0000 | |
168 | C | A | 0.0000 | |
169 | L | A | 0.0000 | |
170 | D | A | -0.8434 | |
171 | A | A | -0.9029 | |
172 | F | A | 0.0000 | |
173 | P | A | -0.2981 | |
174 | K | A | -1.1170 | |
175 | L | A | 0.0000 | |
176 | V | A | 0.0181 | |
177 | C | A | -0.2454 | |
178 | F | A | 0.0000 | |
179 | K | A | -1.0470 | |
180 | K | A | -1.9028 | |
181 | R | A | -1.3353 | |
182 | I | A | 0.0000 | |
183 | E | A | -1.8605 | |
184 | A | A | -1.6037 | |
185 | I | A | 0.0000 | |
186 | P | A | -1.4014 | |
187 | Q | A | -1.7553 | |
188 | I | A | 0.0000 | |
189 | D | A | -3.0202 | |
190 | K | A | -3.3281 | |
191 | Y | A | 0.0000 | |
192 | L | A | -1.9884 | |
193 | K | A | -2.8019 | |
194 | S | A | -2.0660 | |
195 | S | A | -1.4849 | |
196 | K | A | -2.1102 | |
197 | Y | A | -1.0461 | |
198 | I | A | 0.0000 | |
199 | A | A | -0.1973 | |
200 | W | A | -0.5862 | |
201 | P | A | 0.0000 | |
202 | L | A | 0.0000 | |
203 | Q | A | 0.0000 | |
204 | G | A | -0.5793 | |
205 | W | A | -1.4141 | |
206 | Q | A | -1.4149 | |
207 | A | A | 0.0000 | |
208 | T | A | -0.9055 | |
209 | F | A | -0.3437 | |
210 | G | A | 0.0000 | |
211 | G | A | -0.8792 | |
212 | G | A | -1.8060 | |
213 | D | A | -2.6429 | |
214 | H | A | -2.0861 | |
215 | P | A | -1.5486 | |
216 | P | A | -1.6955 | |
217 | K | A | -2.8339 | |
218 | G | A | -2.2179 | |
219 | G | A | -1.2581 | |
220 | G | A | -0.9246 | |
221 | G | A | -0.5594 | |
222 | S | A | -0.7007 | |
223 | G | A | -0.8349 | |
224 | G | A | -0.9052 | |
225 | G | A | -1.3756 | |
226 | G | A | -1.4539 | |
227 | S | A | 0.0000 | |
228 | D | A | -1.3076 | |
229 | D | A | 0.0000 | |
230 | D | A | 0.0000 | |
231 | D | A | -1.3960 | |
232 | K | A | -1.7198 | |
233 | I | A | 0.7994 | |
234 | Q | A | 0.0000 | |
235 | L | A | -0.1596 | |
236 | L | A | -0.4831 | |
237 | N | A | -1.5223 | |
238 | A | A | -1.3611 | |
239 | K | A | -2.5843 | |
240 | Q | A | -2.4123 | |
241 | I | A | 0.0000 | |
242 | L | A | -1.6414 | |
243 | G | A | -2.0837 | |
244 | Q | A | -2.1155 | |
245 | L | A | 0.0000 | |
246 | D | A | -2.4954 | |
247 | G | A | -1.7755 | |
248 | G | A | -1.4415 | |
249 | S | A | -0.7509 | |
250 | V | A | 0.1109 | |
251 | A | A | 0.3220 | |
252 | V | A | 0.1722 | |
253 | L | A | 0.4892 | |
254 | P | A | -0.0479 | |
255 | V | A | 0.1782 | |
256 | I | A | -0.0083 | |
257 | D | A | -0.9529 | |
258 | S | A | 0.0000 | |
259 | T | A | 0.0000 | |
260 | N | A | 0.0000 | |
261 | Q | A | -0.8409 | |
262 | Y | A | -0.5974 | |
263 | L | A | 0.0000 | |
264 | L | A | -0.7630 | |
265 | D | A | -2.1635 | |
266 | R | A | -1.9108 | |
267 | I | A | -1.5943 | |
268 | G | A | -1.8651 | |
269 | E | A | -2.6063 | |
270 | L | A | -1.9166 | |
271 | K | A | -2.4830 | |
272 | S | A | -1.7315 | |
273 | G | A | 0.0000 | |
274 | D | A | 0.0000 | |
275 | A | A | 0.0000 | |
276 | C | A | 0.0000 | |
277 | I | A | 0.0000 | |
278 | A | A | 0.0000 | |
279 | E | A | 0.0000 | |
280 | Y | A | 0.0000 | |
281 | Q | A | 0.0000 | |
282 | Q | A | -1.3346 | |
283 | A | A | -1.0427 | |
284 | G | A | 0.0000 | |
285 | R | A | -2.5733 | |
286 | G | A | 0.0000 | |
287 | R | A | -3.4230 | |
288 | R | A | -3.6276 | |
289 | G | A | -3.2857 | |
290 | R | A | -3.9799 | |
291 | K | A | -3.2858 | |
292 | W | A | -1.4735 | |
293 | F | A | -0.4166 | |
294 | S | A | 0.0000 | |
295 | P | A | 0.0000 | |
296 | F | A | 0.0000 | |
297 | G | A | 0.0000 | |
298 | A | A | 0.0000 | |
299 | N | A | 0.0000 | |
300 | L | A | 0.0000 | |
301 | Y | A | 0.0000 | |
302 | L | A | 0.0000 | |
303 | S | A | 0.0000 | |
304 | M | A | 0.0000 | |
305 | F | A | 0.0000 | |
306 | W | A | 0.0000 | |
307 | R | A | -2.5972 | |
308 | L | A | 0.0000 | |
309 | E | A | -3.3365 | |
310 | Q | A | -2.7876 | |
311 | G | A | 0.0000 | |
312 | P | A | -1.2988 | |
313 | A | A | -0.5210 | |
314 | A | A | -0.5092 | |
315 | A | A | 0.2161 | |
316 | I | A | 0.4009 | |
317 | G | A | 0.0000 | |
318 | L | A | 0.0000 | |
319 | S | A | 0.0000 | |
320 | L | A | 0.0000 | |
321 | V | A | 0.0000 | |
322 | I | A | 0.0000 | |
323 | G | A | 0.0000 | |
324 | I | A | 0.0000 | |
325 | V | A | 0.0000 | |
326 | M | A | 0.0000 | |
327 | A | A | 0.0000 | |
328 | E | A | -1.3990 | |
329 | V | A | 0.0000 | |
330 | L | A | 0.0000 | |
331 | R | A | -3.0778 | |
332 | K | A | -2.5046 | |
333 | L | A | -1.3864 | |
334 | G | A | -1.9232 | |
335 | A | A | 0.0000 | |
336 | D | A | -3.5122 | |
337 | K | A | -3.1454 | |
338 | V | A | 0.0000 | |
339 | R | A | -1.8213 | |
340 | V | A | 0.0000 | |
341 | K | A | 0.0000 | |
342 | W | A | 0.0000 | |
343 | P | A | -0.3504 | |
344 | N | A | -0.5663 | |
345 | D | A | -0.4303 | |
346 | L | A | 0.0000 | |
347 | Y | A | -1.0837 | |
348 | L | A | 0.0000 | |
349 | Q | A | -2.1884 | |
350 | D | A | -1.7571 | |
351 | R | A | -1.5113 | |
352 | K | A | -1.0464 | |
353 | L | A | 0.0000 | |
354 | A | A | 0.0000 | |
355 | G | A | 0.0000 | |
356 | I | A | 0.0000 | |
357 | L | A | 0.0000 | |
358 | V | A | -0.0094 | |
359 | E | A | -0.1809 | |
360 | L | A | 0.0111 | |
361 | T | A | -0.6268 | |
362 | G | A | -1.6323 | |
363 | K | A | -2.3377 | |
364 | T | A | -1.7733 | |
365 | G | A | -2.1812 | |
366 | D | A | -2.9503 | |
367 | A | A | -2.7619 | |
368 | A | A | 0.0000 | |
369 | Q | A | -1.4145 | |
370 | I | A | 0.0000 | |
371 | V | A | 0.0000 | |
372 | I | A | 0.0000 | |
373 | G | A | 0.0000 | |
374 | A | A | 0.0000 | |
375 | G | A | -0.0718 | |
376 | I | A | 0.0000 | |
377 | N | A | 0.0000 | |
378 | M | A | 0.0000 | |
379 | A | A | 0.0000 | |
380 | M | A | 0.0000 | |
381 | R | A | -1.1930 | |
382 | R | A | -2.2948 | |
383 | V | A | -1.3971 | |
384 | E | A | -2.6498 | |
385 | E | A | -3.1139 | |
386 | S | A | -1.9588 | |
387 | V | A | 0.0000 | |
388 | V | A | -0.6738 | |
389 | N | A | -1.8650 | |
390 | Q | A | -1.7824 | |
391 | G | A | -1.0577 | |
392 | W | A | -0.7746 | |
393 | I | A | 0.0000 | |
394 | T | A | 0.0000 | |
395 | L | A | 0.0000 | |
396 | Q | A | -1.3230 | |
397 | E | A | -1.2925 | |
398 | A | A | -1.1043 | |
399 | G | A | -1.0485 | |
400 | I | A | -0.9313 | |
401 | N | A | -1.4710 | |
402 | L | A | -0.7247 | |
403 | D | A | -0.4377 | |
404 | R | A | 0.0000 | |
405 | N | A | 0.0000 | |
406 | T | A | -0.3928 | |
407 | L | A | 0.0000 | |
408 | A | A | 0.0000 | |
409 | A | A | 0.0000 | |
410 | M | A | -0.6177 | |
411 | L | A | 0.0000 | |
412 | I | A | 0.0000 | |
413 | R | A | -1.5783 | |
414 | E | A | -1.1928 | |
415 | L | A | 0.0000 | |
416 | R | A | -1.0742 | |
417 | A | A | -0.9226 | |
418 | A | A | 0.0000 | |
419 | L | A | 0.0000 | |
420 | E | A | -2.4770 | |
421 | L | A | -1.5651 | |
422 | F | A | 0.0000 | |
423 | E | A | -2.9050 | |
424 | Q | A | -2.7208 | |
425 | E | A | -2.7618 | |
426 | G | A | -1.9631 | |
427 | L | A | 0.0000 | |
428 | A | A | -1.1194 | |
429 | P | A | -0.4360 | |
430 | Y | A | 0.0000 | |
431 | L | A | -1.2522 | |
432 | S | A | -1.2436 | |
433 | R | A | -1.5093 | |
434 | W | A | 0.0000 | |
435 | E | A | -2.5814 | |
436 | K | A | -2.3379 | |
437 | L | A | 0.0000 | |
438 | D | A | 0.0000 | |
439 | N | A | 0.0000 | |
440 | F | A | 0.0000 | |
441 | I | A | -1.0351 | |
442 | N | A | -1.5394 | |
443 | R | A | -1.3930 | |
444 | P | A | -1.3762 | |
445 | V | A | 0.0000 | |
446 | K | A | -0.8208 | |
447 | L | A | 0.0000 | |
448 | I | A | -1.5299 | |
449 | I | A | -1.3021 | |
450 | G | A | -2.0321 | |
451 | D | A | -2.9550 | |
452 | K | A | -3.1371 | |
453 | E | A | -2.5008 | |
454 | I | A | -0.3960 | |
455 | F | A | 0.3111 | |
456 | G | A | -0.2065 | |
457 | I | A | -0.6837 | |
458 | S | A | 0.0000 | |
459 | R | A | -1.2189 | |
460 | G | A | 0.0000 | |
461 | I | A | -1.1775 | |
462 | D | A | -2.1894 | |
463 | K | A | -2.6412 | |
464 | Q | A | -2.1231 | |
465 | G | A | 0.0000 | |
466 | A | A | 0.0000 | |
467 | L | A | 0.0000 | |
468 | L | A | 0.1185 | |
469 | L | A | 0.0000 | |
470 | E | A | 0.0232 | |
471 | Q | A | -0.3266 | |
472 | D | A | -1.3492 | |
473 | G | A | -0.2493 | |
474 | I | A | 1.5940 | |
475 | I | A | 1.4403 | |
476 | K | A | -0.3065 | |
477 | P | A | -0.4895 | |
478 | W | A | 0.3250 | |
479 | M | A | 0.5080 | |
480 | G | A | -0.1131 | |
481 | G | A | -1.2913 | |
482 | E | A | -1.9119 | |
483 | I | A | 0.0000 | |
484 | S | A | -0.5696 | |
485 | L | A | -0.3882 | |
486 | R | A | -1.3796 | |
487 | S | A | -1.6604 | |
488 | A | A | -1.6854 | |
489 | E | A | -2.8000 | |
490 | K | A | -2.7370 |
Calculations for various pH values
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | -0.7495 | 4.019 | View | CSV | PDB |
4.5 | -0.8178 | 3.8943 | View | CSV | PDB |
5.0 | -0.9019 | 3.7109 | View | CSV | PDB |
5.5 | -0.9859 | 3.5013 | View | CSV | PDB |
6.0 | -1.0514 | 3.3034 | View | CSV | PDB |
6.5 | -1.0846 | 3.1562 | View | CSV | PDB |
7.0 | -1.0851 | 3.086 | View | CSV | PDB |
7.5 | -1.064 | 3.0817 | View | CSV | PDB |
8.0 | -1.0311 | 3.1121 | View | CSV | PDB |
8.5 | -0.9896 | 3.156 | View | CSV | PDB |
9.0 | -0.9379 | 3.2042 | View | CSV | PDB |