Project name: b088053f43f22bc

Status: done

Started: 2025-04-01 03:32:01
Chain sequence(s) A: SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKGGGGSGGGGSDDDDKIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:08:27)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/b088053f43f22bc/tmp/folded.pdb                (00:08:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:00)
Show buried residues

Minimal score value
-4.1246
Maximal score value
1.594
Average score
-0.9144
Total score value
-448.0767

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 S A -0.8842
2 P A 0.0000
3 I A -0.5262
4 L A 0.0000
5 G A 0.0000
6 Y A 0.0000
7 W A -0.5439
8 K A -1.0532
9 I A 0.0000
10 K A 0.0000
11 G A 0.0000
12 L A 0.5165
13 V A 0.0000
14 Q A 0.0000
15 P A 0.0000
16 T A 0.0000
17 R A 0.0000
18 L A 0.0000
19 L A 0.0000
20 L A 0.0000
21 E A -1.4227
22 Y A -0.8258
23 L A -0.9726
24 E A -2.2538
25 E A -1.9672
26 K A -2.4208
27 Y A -1.5656
28 E A -1.5183
29 E A -1.0460
30 H A -0.5448
31 L A -0.4928
32 Y A 0.0000
33 E A -2.7470
34 R A -3.6472
35 D A -3.7026
36 E A -3.4463
37 G A -3.3462
38 D A -4.1246
39 K A -4.0788
40 W A 0.0000
41 R A -3.9403
42 N A -3.4180
43 K A -2.4856
44 K A -1.7207
45 F A -0.1178
46 E A -1.6153
47 L A -0.8891
48 G A -1.0366
49 L A 0.0000
50 E A -0.9854
51 F A 0.6134
52 P A -0.6121
53 N A -1.2327
54 L A -0.4255
55 P A 0.0000
56 Y A 0.0000
57 Y A 0.0000
58 I A -0.3629
59 D A -0.8061
60 G A -1.4062
61 D A -2.0375
62 V A -0.8877
63 K A -1.1129
64 L A -0.5497
65 T A -0.7003
66 Q A -0.9782
67 S A 0.0000
68 M A -0.2478
69 A A -0.3726
70 I A 0.0000
71 I A 0.0000
72 R A -1.0594
73 Y A -0.9645
74 I A 0.0000
75 A A 0.0000
76 D A -2.9176
77 K A -2.4621
78 H A -2.0643
79 N A -2.4489
80 M A -1.6900
81 L A -1.8177
82 G A -2.2145
83 G A -1.5336
84 C A -1.4692
85 P A -2.0188
86 K A -3.1461
87 E A -3.3371
88 R A -2.5100
89 A A -1.8657
90 E A -2.2038
91 I A 0.0000
92 S A -0.8693
93 M A -0.2523
94 L A 0.0000
95 E A 0.0000
96 G A -0.5435
97 A A -0.4485
98 V A 0.0000
99 L A -0.4504
100 D A -1.5474
101 I A 0.0000
102 R A 0.0000
103 Y A -0.3763
104 G A -1.0055
105 V A 0.0000
106 S A -0.4968
107 R A -1.4940
108 I A 0.0000
109 A A 0.0000
110 Y A -0.5017
111 S A -1.6883
112 K A -2.6422
113 D A -2.9877
114 F A 0.0000
115 E A -2.9006
116 T A -1.8588
117 L A -1.4997
118 K A -1.4704
119 V A 0.0000
120 D A -2.2546
121 F A 0.0000
122 L A 0.0000
123 S A -2.0203
124 K A -2.6331
125 L A 0.0000
126 P A 0.0000
127 E A -2.4974
128 M A -1.3790
129 L A 0.0000
130 K A -2.1483
131 M A -0.9950
132 F A 0.0000
133 E A 0.0000
134 D A -1.9803
135 R A -1.5897
136 L A 0.0000
137 C A -1.1100
138 H A -1.9362
139 K A -2.5795
140 T A -1.7320
141 Y A -1.3865
142 L A 0.0000
143 N A -1.6995
144 G A -2.0348
145 D A -2.7716
146 H A -2.0764
147 V A 0.0000
148 T A -0.5879
149 H A 0.0000
150 P A 0.0000
151 D A 0.0000
152 F A 0.0000
153 M A 0.0000
154 L A 0.0000
155 Y A 0.0000
156 D A 0.0000
157 A A 0.0000
158 L A 0.0000
159 D A -0.3384
160 V A 0.0000
161 V A 0.0000
162 L A 0.0000
163 Y A -0.2152
164 M A 0.0000
165 D A 0.0000
166 P A 0.0000
167 M A 0.0000
168 C A 0.0000
169 L A 0.0000
170 D A -0.8434
171 A A -0.9029
172 F A 0.0000
173 P A -0.2981
174 K A -1.1170
175 L A 0.0000
176 V A 0.0181
177 C A -0.2454
178 F A 0.0000
179 K A -1.0470
180 K A -1.9028
181 R A -1.3353
182 I A 0.0000
183 E A -1.8605
184 A A -1.6037
185 I A 0.0000
186 P A -1.4014
187 Q A -1.7553
188 I A 0.0000
189 D A -3.0202
190 K A -3.3281
191 Y A 0.0000
192 L A -1.9884
193 K A -2.8019
194 S A -2.0660
195 S A -1.4849
196 K A -2.1102
197 Y A -1.0461
198 I A 0.0000
199 A A -0.1973
200 W A -0.5862
201 P A 0.0000
202 L A 0.0000
203 Q A 0.0000
204 G A -0.5793
205 W A -1.4141
206 Q A -1.4149
207 A A 0.0000
208 T A -0.9055
209 F A -0.3437
210 G A 0.0000
211 G A -0.8792
212 G A -1.8060
213 D A -2.6429
214 H A -2.0861
215 P A -1.5486
216 P A -1.6955
217 K A -2.8339
218 G A -2.2179
219 G A -1.2581
220 G A -0.9246
221 G A -0.5594
222 S A -0.7007
223 G A -0.8349
224 G A -0.9052
225 G A -1.3756
226 G A -1.4539
227 S A 0.0000
228 D A -1.3076
229 D A 0.0000
230 D A 0.0000
231 D A -1.3960
232 K A -1.7198
233 I A 0.7994
234 Q A 0.0000
235 L A -0.1596
236 L A -0.4831
237 N A -1.5223
238 A A -1.3611
239 K A -2.5843
240 Q A -2.4123
241 I A 0.0000
242 L A -1.6414
243 G A -2.0837
244 Q A -2.1155
245 L A 0.0000
246 D A -2.4954
247 G A -1.7755
248 G A -1.4415
249 S A -0.7509
250 V A 0.1109
251 A A 0.3220
252 V A 0.1722
253 L A 0.4892
254 P A -0.0479
255 V A 0.1782
256 I A -0.0083
257 D A -0.9529
258 S A 0.0000
259 T A 0.0000
260 N A 0.0000
261 Q A -0.8409
262 Y A -0.5974
263 L A 0.0000
264 L A -0.7630
265 D A -2.1635
266 R A -1.9108
267 I A -1.5943
268 G A -1.8651
269 E A -2.6063
270 L A -1.9166
271 K A -2.4830
272 S A -1.7315
273 G A 0.0000
274 D A 0.0000
275 A A 0.0000
276 C A 0.0000
277 I A 0.0000
278 A A 0.0000
279 E A 0.0000
280 Y A 0.0000
281 Q A 0.0000
282 Q A -1.3346
283 A A -1.0427
284 G A 0.0000
285 R A -2.5733
286 G A 0.0000
287 R A -3.4230
288 R A -3.6276
289 G A -3.2857
290 R A -3.9799
291 K A -3.2858
292 W A -1.4735
293 F A -0.4166
294 S A 0.0000
295 P A 0.0000
296 F A 0.0000
297 G A 0.0000
298 A A 0.0000
299 N A 0.0000
300 L A 0.0000
301 Y A 0.0000
302 L A 0.0000
303 S A 0.0000
304 M A 0.0000
305 F A 0.0000
306 W A 0.0000
307 R A -2.5972
308 L A 0.0000
309 E A -3.3365
310 Q A -2.7876
311 G A 0.0000
312 P A -1.2988
313 A A -0.5210
314 A A -0.5092
315 A A 0.2161
316 I A 0.4009
317 G A 0.0000
318 L A 0.0000
319 S A 0.0000
320 L A 0.0000
321 V A 0.0000
322 I A 0.0000
323 G A 0.0000
324 I A 0.0000
325 V A 0.0000
326 M A 0.0000
327 A A 0.0000
328 E A -1.3990
329 V A 0.0000
330 L A 0.0000
331 R A -3.0778
332 K A -2.5046
333 L A -1.3864
334 G A -1.9232
335 A A 0.0000
336 D A -3.5122
337 K A -3.1454
338 V A 0.0000
339 R A -1.8213
340 V A 0.0000
341 K A 0.0000
342 W A 0.0000
343 P A -0.3504
344 N A -0.5663
345 D A -0.4303
346 L A 0.0000
347 Y A -1.0837
348 L A 0.0000
349 Q A -2.1884
350 D A -1.7571
351 R A -1.5113
352 K A -1.0464
353 L A 0.0000
354 A A 0.0000
355 G A 0.0000
356 I A 0.0000
357 L A 0.0000
358 V A -0.0094
359 E A -0.1809
360 L A 0.0111
361 T A -0.6268
362 G A -1.6323
363 K A -2.3377
364 T A -1.7733
365 G A -2.1812
366 D A -2.9503
367 A A -2.7619
368 A A 0.0000
369 Q A -1.4145
370 I A 0.0000
371 V A 0.0000
372 I A 0.0000
373 G A 0.0000
374 A A 0.0000
375 G A -0.0718
376 I A 0.0000
377 N A 0.0000
378 M A 0.0000
379 A A 0.0000
380 M A 0.0000
381 R A -1.1930
382 R A -2.2948
383 V A -1.3971
384 E A -2.6498
385 E A -3.1139
386 S A -1.9588
387 V A 0.0000
388 V A -0.6738
389 N A -1.8650
390 Q A -1.7824
391 G A -1.0577
392 W A -0.7746
393 I A 0.0000
394 T A 0.0000
395 L A 0.0000
396 Q A -1.3230
397 E A -1.2925
398 A A -1.1043
399 G A -1.0485
400 I A -0.9313
401 N A -1.4710
402 L A -0.7247
403 D A -0.4377
404 R A 0.0000
405 N A 0.0000
406 T A -0.3928
407 L A 0.0000
408 A A 0.0000
409 A A 0.0000
410 M A -0.6177
411 L A 0.0000
412 I A 0.0000
413 R A -1.5783
414 E A -1.1928
415 L A 0.0000
416 R A -1.0742
417 A A -0.9226
418 A A 0.0000
419 L A 0.0000
420 E A -2.4770
421 L A -1.5651
422 F A 0.0000
423 E A -2.9050
424 Q A -2.7208
425 E A -2.7618
426 G A -1.9631
427 L A 0.0000
428 A A -1.1194
429 P A -0.4360
430 Y A 0.0000
431 L A -1.2522
432 S A -1.2436
433 R A -1.5093
434 W A 0.0000
435 E A -2.5814
436 K A -2.3379
437 L A 0.0000
438 D A 0.0000
439 N A 0.0000
440 F A 0.0000
441 I A -1.0351
442 N A -1.5394
443 R A -1.3930
444 P A -1.3762
445 V A 0.0000
446 K A -0.8208
447 L A 0.0000
448 I A -1.5299
449 I A -1.3021
450 G A -2.0321
451 D A -2.9550
452 K A -3.1371
453 E A -2.5008
454 I A -0.3960
455 F A 0.3111
456 G A -0.2065
457 I A -0.6837
458 S A 0.0000
459 R A -1.2189
460 G A 0.0000
461 I A -1.1775
462 D A -2.1894
463 K A -2.6412
464 Q A -2.1231
465 G A 0.0000
466 A A 0.0000
467 L A 0.0000
468 L A 0.1185
469 L A 0.0000
470 E A 0.0232
471 Q A -0.3266
472 D A -1.3492
473 G A -0.2493
474 I A 1.5940
475 I A 1.4403
476 K A -0.3065
477 P A -0.4895
478 W A 0.3250
479 M A 0.5080
480 G A -0.1131
481 G A -1.2913
482 E A -1.9119
483 I A 0.0000
484 S A -0.5696
485 L A -0.3882
486 R A -1.3796
487 S A -1.6604
488 A A -1.6854
489 E A -2.8000
490 K A -2.7370
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7495 4.019 View CSV PDB
4.5 -0.8178 3.8943 View CSV PDB
5.0 -0.9019 3.7109 View CSV PDB
5.5 -0.9859 3.5013 View CSV PDB
6.0 -1.0514 3.3034 View CSV PDB
6.5 -1.0846 3.1562 View CSV PDB
7.0 -1.0851 3.086 View CSV PDB
7.5 -1.064 3.0817 View CSV PDB
8.0 -1.0311 3.1121 View CSV PDB
8.5 -0.9896 3.156 View CSV PDB
9.0 -0.9379 3.2042 View CSV PDB