| Chain sequence(s) |
A: QCIQPGTGYNNGYFYSYWNDGHGGVTYCNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWTRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQQGLTLGTMDYQIVAVEGYFSSGSADITVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:03)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:41)
[INFO] Main: Simulation completed successfully. (00:02:44)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | Q | A | -0.7312 | |
| 2 | C | A | 0.2119 | |
| 3 | I | A | -0.0226 | |
| 4 | Q | A | -0.8192 | |
| 5 | P | A | -0.7215 | |
| 6 | G | A | -0.4440 | |
| 7 | T | A | 0.0323 | |
| 8 | G | A | 0.4478 | |
| 9 | Y | A | 0.8458 | |
| 10 | N | A | -0.4868 | |
| 11 | N | A | -1.4156 | |
| 12 | G | A | -0.7559 | |
| 13 | Y | A | -0.1987 | |
| 14 | F | A | 0.0000 | |
| 15 | Y | A | 0.2604 | |
| 16 | S | A | 0.0000 | |
| 17 | Y | A | 0.0000 | |
| 18 | W | A | -0.2030 | |
| 19 | N | A | -0.9831 | |
| 20 | D | A | -1.4470 | |
| 21 | G | A | -1.5427 | |
| 22 | H | A | -1.7730 | |
| 23 | G | A | -1.5989 | |
| 24 | G | A | -1.2044 | |
| 25 | V | A | -1.0853 | |
| 26 | T | A | -0.4238 | |
| 27 | Y | A | 0.0000 | |
| 28 | C | A | -0.2520 | |
| 29 | N | A | 0.0000 | |
| 30 | G | A | -0.8658 | |
| 31 | P | A | -1.0463 | |
| 32 | G | A | -1.0906 | |
| 33 | G | A | 0.0000 | |
| 34 | Q | A | -0.9280 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | -0.8079 | |
| 37 | V | A | 0.0000 | |
| 38 | N | A | -1.5517 | |
| 39 | W | A | 0.0000 | |
| 40 | S | A | -1.1738 | |
| 41 | N | A | -1.1629 | |
| 42 | S | A | 0.0000 | |
| 43 | G | A | 0.0000 | |
| 44 | N | A | -0.0657 | |
| 45 | F | A | 0.0000 | |
| 46 | V | A | 0.0000 | |
| 47 | G | A | 0.0000 | |
| 48 | G | A | 0.0000 | |
| 49 | K | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | W | A | 0.0288 | |
| 52 | Q | A | -0.2689 | |
| 53 | P | A | -0.4428 | |
| 54 | G | A | 0.0000 | |
| 55 | T | A | -1.0181 | |
| 56 | K | A | -1.8517 | |
| 57 | N | A | -2.0252 | |
| 58 | K | A | -1.0812 | |
| 59 | V | A | -0.0012 | |
| 60 | I | A | 0.0000 | |
| 61 | N | A | -1.0504 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.8504 | |
| 64 | G | A | -0.8249 | |
| 65 | S | A | -0.9837 | |
| 66 | Y | A | -1.1050 | |
| 67 | N | A | -1.8804 | |
| 68 | P | A | -1.5979 | |
| 69 | N | A | -1.7295 | |
| 70 | G | A | -0.6025 | |
| 71 | N | A | 0.1089 | |
| 72 | S | A | 0.0000 | |
| 73 | Y | A | 0.0000 | |
| 74 | L | A | 0.0000 | |
| 75 | S | A | 0.0000 | |
| 76 | V | A | 0.0000 | |
| 77 | Y | A | 0.0000 | |
| 78 | G | A | 0.0000 | |
| 79 | W | A | 0.0000 | |
| 80 | T | A | 0.0000 | |
| 81 | R | A | -1.6869 | |
| 82 | N | A | -1.9898 | |
| 83 | P | A | -1.2500 | |
| 84 | L | A | -0.4293 | |
| 85 | I | A | 0.0000 | |
| 86 | E | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | Y | A | 0.0000 | |
| 89 | I | A | 0.0000 | |
| 90 | V | A | 0.0000 | |
| 91 | E | A | 0.0000 | |
| 92 | N | A | -1.0742 | |
| 93 | F | A | -0.4125 | |
| 94 | G | A | -0.6222 | |
| 95 | T | A | -0.2913 | |
| 96 | Y | A | 0.2832 | |
| 97 | N | A | -0.3062 | |
| 98 | P | A | 0.0000 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | -0.5050 | |
| 101 | G | A | -0.8259 | |
| 102 | A | A | -0.9001 | |
| 103 | T | A | -1.0627 | |
| 104 | K | A | -1.7643 | |
| 105 | L | A | -0.9147 | |
| 106 | G | A | -1.3418 | |
| 107 | E | A | -1.8396 | |
| 108 | V | A | -0.8906 | |
| 109 | T | A | -0.4776 | |
| 110 | S | A | 0.0000 | |
| 111 | D | A | -0.9300 | |
| 112 | G | A | -0.8847 | |
| 113 | S | A | 0.0000 | |
| 114 | V | A | -0.8309 | |
| 115 | Y | A | 0.0000 | |
| 116 | D | A | 0.0000 | |
| 117 | I | A | 0.0000 | |
| 118 | Y | A | 0.0000 | |
| 119 | R | A | -1.0099 | |
| 120 | T | A | -0.9324 | |
| 121 | Q | A | -1.1029 | |
| 122 | R | A | -0.9650 | |
| 123 | V | A | 0.2848 | |
| 124 | N | A | -1.1246 | |
| 125 | Q | A | -1.1513 | |
| 126 | P | A | -0.3624 | |
| 127 | S | A | 0.3061 | |
| 128 | I | A | 1.2573 | |
| 129 | I | A | 1.9283 | |
| 130 | G | A | 0.4619 | |
| 131 | T | A | -0.2241 | |
| 132 | A | A | -0.0461 | |
| 133 | T | A | -0.3457 | |
| 134 | F | A | 0.0000 | |
| 135 | Y | A | -0.0802 | |
| 136 | Q | A | 0.0000 | |
| 137 | Y | A | 0.0000 | |
| 138 | W | A | 0.0000 | |
| 139 | S | A | 0.0000 | |
| 140 | V | A | 0.0000 | |
| 141 | R | A | 0.0000 | |
| 142 | R | A | -2.5115 | |
| 143 | N | A | -2.5688 | |
| 144 | H | A | -2.0373 | |
| 145 | R | A | -1.3237 | |
| 146 | S | A | -0.7997 | |
| 147 | S | A | -0.7525 | |
| 148 | G | A | -0.7988 | |
| 149 | S | A | -0.6246 | |
| 150 | V | A | 0.0000 | |
| 151 | N | A | -0.8041 | |
| 152 | T | A | 0.0000 | |
| 153 | A | A | -1.4605 | |
| 154 | N | A | -1.3510 | |
| 155 | H | A | 0.0000 | |
| 156 | F | A | 0.0000 | |
| 157 | N | A | -2.0938 | |
| 158 | A | A | -1.6364 | |
| 159 | W | A | 0.0000 | |
| 160 | A | A | -1.3280 | |
| 161 | Q | A | -1.9344 | |
| 162 | Q | A | -1.6095 | |
| 163 | G | A | -1.1665 | |
| 164 | L | A | 0.0000 | |
| 165 | T | A | -0.6788 | |
| 166 | L | A | -0.6400 | |
| 167 | G | A | -1.0714 | |
| 168 | T | A | -0.9840 | |
| 169 | M | A | -0.7435 | |
| 170 | D | A | 0.0000 | |
| 171 | Y | A | 0.0000 | |
| 172 | Q | A | 0.0000 | |
| 173 | I | A | 0.0000 | |
| 174 | V | A | 0.0000 | |
| 175 | A | A | 0.0000 | |
| 176 | V | A | 0.0000 | |
| 177 | E | A | -0.0200 | |
| 178 | G | A | 0.0000 | |
| 179 | Y | A | 1.3714 | |
| 180 | F | A | 1.5408 | |
| 181 | S | A | 0.0000 | |
| 182 | S | A | -1.0413 | |
| 183 | G | A | -1.5650 | |
| 184 | S | A | -1.4276 | |
| 185 | A | A | 0.0000 | |
| 186 | D | A | -1.3791 | |
| 187 | I | A | 0.0000 | |
| 188 | T | A | -0.8194 | |
| 189 | V | A | 0.0000 | |
| 190 | S | A | -0.4919 |