Project name: TtMqnB wt dimer

Status: done

Started: 2026-07-14 12:07:14
Chain sequence(s) A: MGSSHHHHHHSSGENLYFQGGTMWLLLSPTRLEAPFLQGEPFAFLAWRGLKGPGFVYLETGIGKVNAAMALAAYAARNPVEKALLFGLAGAYPGGPSLGEAVLVEEEVEADLGLKEGLAPLGFPALALGERRYFNRFPLDPGLTGELARGLGLKVAVGLTRDLVSETPEEALALAQRWGASLENMEGAAFARACLALGVRGAELRAISNPAGVREKAHWRTKEALSALARAVRRLLAEEGGARRPPG
B: MGSSHHHHHHSSGENLYFQGGTMWLLLSPTRLEAPFLQGEPFAFLAWRGLKGPGFVYLETGIGKVNAAMALAAYAARNPVEKALLFGLAGAYPGGPSLGEAVLVEEEVEADLGLKEGLAPLGFPALALGERRYFNRFPLDPGLTGELARGLGLKVAVGLTRDLVSETPEEALALAQRWGASLENMEGAAFARACLALGVRGAELRAISNPAGVREKAHWRTKEALSALARAVRRLLAEEGGARRPPG
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:04:41)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/beeb1ee51597296/tmp/folded.pdb                (00:04:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:36)
Show buried residues

Minimal score value
-3.7276
Maximal score value
1.9268
Average score
-0.7642
Total score value
-377.5209

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.7470
2 G A -0.2504
3 S A -0.6924
4 S A -1.2221
5 H A -2.1250
6 H A -2.4782
7 H A -2.7186
8 H A -2.7143
9 H A -2.5022
10 H A -2.1549
11 S A -1.6860
12 S A -1.7250
13 G A -1.8038
14 E A -2.0470
15 N A -0.9080
16 L A 1.2549
17 Y A 1.8367
18 F A 1.9268
19 Q A -0.2971
20 G A -0.9212
21 G A -1.1617
22 T A -0.6130
23 M A -0.2247
24 W A 0.0000
25 L A 0.0000
26 L A 0.0000
27 L A 0.0000
28 S A 0.0000
29 P A 0.0000
30 T A -0.3837
31 R A -1.4422
32 L A 0.4973
33 E A 0.0000
34 A A 0.0000
35 P A -0.3458
36 F A -0.6907
37 L A 0.0000
38 Q A -1.7885
39 G A -1.9350
40 E A -2.4297
41 P A -1.6274
42 F A -0.6673
43 A A -0.1125
44 F A 0.2903
45 L A 1.0908
46 A A 0.3779
47 W A 0.0000
48 R A -1.6877
49 G A 0.0000
50 L A -1.4670
51 K A -1.7742
52 G A -1.3569
53 P A -0.4543
54 G A -0.3184
55 F A 0.0000
56 V A 0.0000
57 Y A 0.0000
58 L A 0.0000
59 E A 0.0000
60 T A 0.0000
61 G A -0.3877
62 I A 0.0000
63 G A 0.0000
64 K A 0.0000
65 V A 0.0000
66 N A 0.0000
67 A A 0.0000
68 A A 0.0000
69 M A 0.0000
70 A A 0.0000
71 L A 0.0000
72 A A 0.0000
73 A A 0.0000
74 Y A -0.5012
75 A A -0.9056
76 A A 0.0000
77 R A -2.3518
78 N A -1.5612
79 P A -1.0617
80 V A -1.2912
81 E A -2.1962
82 K A -1.6927
83 A A 0.0000
84 L A 0.0000
85 L A 0.0000
86 F A 0.0000
87 G A 0.0000
88 L A 0.3845
89 A A 0.0000
90 G A 0.0000
91 A A 0.0000
92 Y A 0.0000
93 P A -0.5580
94 G A -0.5366
95 G A -0.4704
96 P A -0.4654
97 S A -0.3339
98 L A -0.3607
99 G A -1.2230
100 E A -0.8844
101 A A 0.0000
102 V A 0.0000
103 L A 0.0000
104 V A 0.0000
105 E A -1.5077
106 E A -1.0306
107 E A 0.0000
108 V A 0.0000
109 E A 0.0000
110 A A 0.0000
111 D A 0.0000
112 L A 0.0000
113 G A 0.0000
114 L A -0.9035
115 K A -2.1744
116 E A -2.6138
117 G A 0.0000
118 L A 0.0000
119 A A -0.0986
120 P A -0.0997
121 L A 0.4823
122 G A 0.1588
123 F A 0.4486
124 P A -0.1626
125 A A 0.0000
126 L A -0.2655
127 A A -1.1782
128 L A -1.2050
129 G A -1.9404
130 E A -3.2047
131 R A -3.4953
132 R A -2.7857
133 Y A 0.0000
134 F A 0.1165
135 N A 0.0000
136 R A -0.8040
137 F A 0.0000
138 P A -0.7754
139 L A 0.0000
140 D A -1.3809
141 P A -1.4814
142 G A -1.4308
143 L A 0.0000
144 T A 0.0000
145 G A -1.9571
146 E A -2.7391
147 L A 0.0000
148 A A -2.0056
149 R A -2.8285
150 G A -2.1688
151 L A -1.7894
152 G A -1.4597
153 L A -1.0416
154 K A -1.6938
155 V A -0.5382
156 A A -0.3574
157 V A -0.2538
158 G A 0.0000
159 L A 0.0000
160 T A 0.0000
161 R A 0.0000
162 D A 0.0000
163 L A 0.0000
164 V A 0.1342
165 S A 0.0000
166 E A -0.9975
167 T A -0.9456
168 P A -1.0652
169 E A -1.6265
170 E A -0.8824
171 A A 0.0000
172 L A -0.0308
173 A A -0.8423
174 L A 0.0000
175 A A -1.0556
176 Q A -1.8230
177 R A -2.6376
178 W A -1.6179
179 G A -1.2536
180 A A 0.0000
181 S A -0.2750
182 L A 0.0000
183 E A 0.0000
184 N A 0.0000
185 M A 0.1975
186 E A 0.0000
187 G A 0.0000
188 A A 0.0000
189 A A 0.0000
190 F A 0.0000
191 A A 0.0000
192 R A 0.0000
193 A A 0.0000
194 C A 0.0000
195 L A 0.0222
196 A A 0.4328
197 L A -0.0178
198 G A -0.8072
199 V A 0.0000
200 R A -2.4506
201 G A 0.0000
202 A A 0.0000
203 E A 0.0000
204 L A 0.0000
205 R A 0.0000
206 A A 0.0000
207 I A 0.0000
208 S A 0.0000
209 N A -1.0720
210 P A -0.7453
211 A A 0.0000
212 G A 0.0000
213 V A -1.8215
214 R A -3.1296
215 E A -3.6149
216 K A -3.3279
217 A A -2.0335
218 H A -2.1637
219 W A -2.1391
220 R A -2.2877
221 T A -1.9546
222 K A -2.7950
223 E A -2.8495
224 A A 0.0000
225 L A -1.1711
226 S A -1.5434
227 A A -1.3651
228 L A 0.0000
229 A A -1.6927
230 R A -2.7016
231 A A 0.0000
232 V A 0.0000
233 R A -3.1581
234 R A -3.0928
235 L A 0.0000
236 L A -1.6090
237 A A -2.0019
238 E A -2.9738
239 E A -2.3535
240 G A -2.1325
241 G A -2.4345
242 A A -2.3920
243 R A -3.6841
244 R A -3.2167
245 P A -1.9750
246 P A -1.3701
247 G A -0.9795
1 M B 0.7472
2 G B -0.2503
3 S B -0.6880
4 S B -1.2190
5 H B -2.1229
6 H B -2.4752
7 H B -2.7162
8 H B -2.7150
9 H B -2.4961
10 H B -2.1542
11 S B -1.6764
12 S B -1.7289
13 G B -1.8031
14 E B -2.0446
15 N B -0.9446
16 L B 1.1736
17 Y B 1.7099
18 F B 1.6490
19 Q B -0.4357
20 G B -1.0053
21 G B -1.2652
22 T B -0.7499
23 M B -0.3872
24 W B 0.0000
25 L B 0.0000
26 L B 0.0000
27 L B 0.0000
28 S B 0.0000
29 P B 0.0000
30 T B -0.3878
31 R B -1.3482
32 L B 0.6584
33 E B 0.0000
34 A B 0.0000
35 P B -0.2824
36 F B -0.6538
37 L B 0.0000
38 Q B -1.7867
39 G B -1.9388
40 E B -2.4357
41 P B -1.5339
42 F B -0.6163
43 A B -0.0825
44 F B 0.0000
45 L B 0.7303
46 A B 0.3226
47 W B 0.0000
48 R B -1.2950
49 G B 0.0000
50 L B -1.4094
51 K B -1.7751
52 G B -1.3644
53 P B -0.4941
54 G B -0.4101
55 F B 0.0000
56 V B 0.0000
57 Y B 0.0000
58 L B 0.0000
59 E B -0.8907
60 T B 0.0000
61 G B -0.3884
62 I B 0.0000
63 G B 0.0000
64 K B 0.0000
65 V B 0.0000
66 N B 0.0000
67 A B 0.0000
68 A B 0.0000
69 M B 0.0000
70 A B 0.0000
71 L B 0.0000
72 A B 0.0000
73 A B 0.0000
74 Y B 0.0000
75 A B -0.8370
76 A B 0.0000
77 R B -1.9811
78 N B -1.3970
79 P B -1.0122
80 V B -1.3125
81 E B -2.2938
82 K B -1.6788
83 A B 0.0000
84 L B 0.0000
85 L B 0.0000
86 F B 0.0000
87 G B 0.0000
88 L B 0.4222
89 A B 0.0000
90 G B 0.0000
91 A B 0.0000
92 Y B 0.0000
93 P B -0.5573
94 G B -0.5377
95 G B -0.4764
96 P B -0.4550
97 S B -0.3516
98 L B -0.3121
99 G B -1.0771
100 E B -0.8642
101 A B 0.0000
102 V B 0.0000
103 L B 0.0000
104 V B 0.0000
105 E B -1.4465
106 E B -0.9760
107 E B 0.0000
108 V B 0.0000
109 E B 0.0000
110 A B 0.0000
111 D B 0.0000
112 L B 0.0000
113 G B 0.0000
114 L B 0.0000
115 K B -2.1913
116 E B -2.6350
117 G B 0.0000
118 L B 0.0000
119 A B -0.1312
120 P B -0.1700
121 L B 0.4366
122 G B 0.1448
123 F B 0.4538
124 P B -0.0634
125 A B 0.0000
126 L B -0.1767
127 A B -1.0513
128 L B -1.1525
129 G B -1.8285
130 E B -2.9319
131 R B -2.8663
132 R B -2.4703
133 Y B -0.6919
134 F B 0.1579
135 N B 0.0000
136 R B -0.7727
137 F B 0.0000
138 P B -0.7802
139 L B 0.0000
140 D B -1.3052
141 P B -1.4221
142 G B -1.4703
143 L B 0.0000
144 T B 0.0000
145 G B -1.8906
146 E B -2.7196
147 L B 0.0000
148 A B -1.9377
149 R B -2.7993
150 G B -2.1593
151 L B -1.7851
152 G B -1.4320
153 L B -0.9919
154 K B -1.5716
155 V B -0.2673
156 A B -0.2142
157 V B -0.1783
158 G B 0.0000
159 L B 0.0000
160 T B 0.0000
161 R B 0.0000
162 D B 0.0000
163 L B 0.0000
164 V B 0.1691
165 S B 0.0000
166 E B -0.9698
167 T B -0.9333
168 P B -1.0362
169 E B -1.6145
170 E B -0.8751
171 A B 0.0000
172 L B -0.0257
173 A B -0.8219
174 L B 0.0000
175 A B -1.0299
176 Q B -1.7850
177 R B -2.5427
178 W B -1.5705
179 G B -1.2278
180 A B 0.0000
181 S B -0.2724
182 L B 0.0000
183 E B 0.0000
184 N B 0.0000
185 M B 0.1988
186 E B 0.0000
187 G B 0.0000
188 A B 0.0000
189 A B 0.0000
190 F B 0.0000
191 A B 0.0000
192 R B 0.0000
193 A B 0.0000
194 C B 0.0000
195 L B -0.0225
196 A B 0.4030
197 L B 0.0258
198 G B -0.7639
199 V B 0.0000
200 R B -2.2272
201 G B 0.0000
202 A B 0.0000
203 E B 0.0000
204 L B 0.0000
205 R B 0.0000
206 A B 0.0000
207 I B 0.0000
208 S B 0.0000
209 N B -1.0472
210 P B -0.7345
211 A B 0.0000
212 G B 0.0000
213 V B -1.7992
214 R B -3.1223
215 E B -3.6241
216 K B -3.3223
217 A B -2.0443
218 H B -2.2098
219 W B -2.0409
220 R B -2.0808
221 T B -1.7713
222 K B -2.5624
223 E B -2.4434
224 A B 0.0000
225 L B -0.9576
226 S B -1.3869
227 A B -1.2613
228 L B 0.0000
229 A B -1.6325
230 R B -2.6887
231 A B 0.0000
232 V B 0.0000
233 R B -3.1525
234 R B -3.1244
235 L B 0.0000
236 L B -1.6862
237 A B -2.0669
238 E B -3.0748
239 E B -2.5768
240 G B -2.3480
241 G B -2.5059
242 A B -2.4587
243 R B -3.7276
244 R B -3.2394
245 P B -1.9763
246 P B -1.3749
247 G B -0.9775
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7554 4.8697 View CSV PDB
4.5 -0.7957 4.8697 View CSV PDB
5.0 -0.8464 4.8697 View CSV PDB
5.5 -0.894 4.8697 View CSV PDB
6.0 -0.9243 4.8697 View CSV PDB
6.5 -0.93 4.8697 View CSV PDB
7.0 -0.9163 4.8696 View CSV PDB
7.5 -0.8938 4.8696 View CSV PDB
8.0 -0.8687 4.8693 View CSV PDB
8.5 -0.843 4.8686 View CSV PDB
9.0 -0.8171 4.8663 View CSV PDB