| Chain sequence(s) |
A: SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK
B: WCNYAYQRTRGPQNKYKRC input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | AQ5B |
| Energy difference between WT (input) and mutated protein (by FoldX) | 7.09829 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:52)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:56)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 21 | S | A | -0.8938 | |
| 22 | S | A | -1.2338 | |
| 23 | P | A | -1.3927 | |
| 24 | S | A | -1.2424 | |
| 25 | E | A | -2.1265 | |
| 26 | G | A | -1.6864 | |
| 27 | L | A | -1.0382 | |
| 28 | C | A | 0.0000 | |
| 29 | P | A | -0.2309 | |
| 30 | P | A | -0.3267 | |
| 31 | G | A | 0.0000 | |
| 32 | H | A | -0.4458 | |
| 33 | H | A | -0.2256 | |
| 34 | I | A | -1.1863 | |
| 35 | S | A | 0.0000 | |
| 36 | E | A | -2.9158 | |
| 37 | D | A | -3.5799 | |
| 38 | G | A | -3.0285 | |
| 39 | R | A | -3.7445 | |
| 40 | D | A | -3.1676 | |
| 41 | C | A | 0.0000 | |
| 42 | I | A | -0.2023 | |
| 43 | S | A | -0.1301 | |
| 44 | C | A | 0.0000 | |
| 45 | K | A | -1.5470 | |
| 46 | Y | A | -0.1779 | |
| 47 | G | A | -1.1261 | |
| 48 | Q | A | -1.9094 | |
| 49 | D | A | -1.4605 | |
| 50 | Y | A | 0.0000 | |
| 51 | S | A | -0.6238 | |
| 52 | T | A | -0.6631 | |
| 53 | H | A | -0.7830 | |
| 54 | W | A | -0.1936 | |
| 55 | N | A | 0.0000 | |
| 56 | D | A | -1.4863 | |
| 57 | L | A | -0.0646 | |
| 58 | L | A | 0.1850 | |
| 59 | F | A | -0.0015 | |
| 60 | C | A | 0.0000 | |
| 61 | L | A | -0.2714 | |
| 62 | R | A | -1.0741 | |
| 63 | C | A | 0.0000 | |
| 64 | T | A | -1.6956 | |
| 65 | R | A | -2.6337 | |
| 66 | C | A | 0.0000 | |
| 67 | D | A | -2.5669 | |
| 68 | S | A | -1.3154 | |
| 69 | G | A | -1.5971 | |
| 70 | E | A | -1.7098 | |
| 71 | V | A | -0.8454 | |
| 72 | E | A | -0.6431 | |
| 73 | L | A | 0.6805 | |
| 74 | S | A | -0.0921 | |
| 75 | P | A | -0.5423 | |
| 76 | C | A | 0.0000 | |
| 77 | T | A | -0.5579 | |
| 78 | T | A | -0.7450 | |
| 79 | T | A | -0.8757 | |
| 80 | R | A | -1.0535 | |
| 81 | N | A | 0.0000 | |
| 82 | T | A | 0.0000 | |
| 83 | V | A | 0.0000 | |
| 84 | C | A | 0.0000 | |
| 85 | Q | A | -0.9357 | |
| 86 | C | A | 0.0000 | |
| 87 | E | A | -3.1847 | |
| 88 | E | A | -2.9094 | |
| 89 | G | A | -2.6848 | |
| 90 | T | A | 0.0000 | |
| 91 | F | A | 0.0000 | |
| 92 | R | A | 0.0000 | |
| 93 | E | A | -2.6812 | |
| 94 | E | A | -3.7981 | |
| 95 | D | A | -3.0857 | |
| 96 | S | A | -2.3959 | |
| 97 | P | A | -2.5518 | |
| 98 | E | A | -2.4938 | |
| 99 | M | A | -0.5166 | |
| 100 | C | A | -1.5044 | |
| 101 | R | A | -2.9030 | |
| 102 | K | A | -3.4846 | |
| 103 | C | A | -2.8832 | |
| 104 | R | A | -3.2637 | |
| 105 | T | A | -2.4105 | |
| 106 | G | A | -1.4539 | |
| 107 | C | A | -1.3242 | |
| 108 | P | A | -1.3538 | |
| 109 | R | A | -2.4775 | |
| 110 | G | A | -1.7720 | |
| 111 | M | A | -1.4594 | |
| 112 | V | A | -1.1176 | |
| 113 | K | A | -2.3260 | |
| 114 | V | A | -1.0915 | |
| 115 | G | A | -1.7254 | |
| 116 | D | A | -2.7494 | |
| 117 | C | A | -2.0205 | |
| 118 | T | A | -1.3062 | |
| 119 | P | A | -1.6186 | |
| 120 | W | A | -0.8871 | |
| 121 | S | A | -1.3469 | |
| 122 | D | A | -2.0580 | |
| 123 | I | A | -2.5205 | |
| 124 | E | A | -2.6643 | |
| 125 | C | A | -1.4911 | |
| 126 | V | A | -0.5850 | |
| 127 | H | A | -1.7212 | |
| 128 | K | A | -2.1184 | |
| 1 | W | B | 0.9521 | |
| 2 | C | B | 0.0155 | |
| 3 | N | B | -1.2178 | |
| 4 | Y | B | -1.2203 | |
| 5 | Q | B | 0.0000 | mutated: AQ5B |
| 6 | Y | B | -1.6748 | |
| 7 | Q | B | 0.0000 | |
| 8 | R | B | -1.7729 | |
| 9 | T | B | 0.0000 | |
| 10 | R | B | -1.4935 | |
| 11 | G | B | -1.1352 | |
| 12 | P | B | -1.7997 | |
| 13 | Q | B | -2.2109 | |
| 14 | N | B | -2.5231 | |
| 15 | K | B | -2.3466 | |
| 16 | Y | B | 0.0000 | |
| 17 | K | B | -2.2105 | |
| 18 | R | B | -1.7595 | |
| 19 | C | B | 0.0264 |