Project name: c98c75ac4dd3f69

Status: done

Started: 2026-03-30 12:24:40
Chain sequence(s) A: GVGYSTGGWTGGTIFSENIVVTKNTRQFICDIKNGHLYKSEVLNTGDTAHRQYAITTPWSYFNFNQYSSHFSPNDWQHLVNDYERFRPKAMIVRVYNLQIKQIMTDGAMGTVYNNDLTAGMHIFCDGDHRYPYVQHPWDDQCMPELPNSIWELPQYAYIPAPISVVDNNTTNTVEEHLLKGVPLYMLENSDHEVLRTGESTEFTFNFGDCEWIENNITFSMPQMMYNPLVRSRRIYSYSGPNNQTSNAFQNAALRTSNWMSGPGIARGTHNATLQTQSAGALVTMVTNGADVSGVGAVRVGYSTDPIYGGQQPDSDLLRLRYSASAAEGQQNPILENAARHTFTREARTKLITGSNGADGNYKEWWMLPNQMWDSAPISRYNPIWVKVPRVNRKTLLDTQDGSIPMSHPPGTIFIKLARIPVPGNGDSFLNIYVTGQVSCEVVWEVEKRGTKNWRPEYMHSATNMSVDAYTINNAGVYAGAVQNADVMQTRFNHHKVL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:04)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:09:45)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/c98c75ac4dd3f69/tmp/folded.pdb                (00:09:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:27)
Show buried residues

Minimal score value
-4.0012
Maximal score value
2.4519
Average score
-0.4787
Total score value
-238.4039

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
39 G A -0.1066
40 V A 0.4784
41 G A 0.3691
42 Y A 0.9605
43 S A 0.0838
44 T A -0.1750
45 G A -0.5011
46 G A -0.3409
47 W A 0.2941
48 T A -0.3248
49 G A -0.6299
50 G A -0.5760
51 T A 0.4164
52 I A 1.8065
53 F A 0.8113
54 S A -0.5687
55 E A -2.6354
56 N A -2.2878
57 I A -0.5953
58 V A 0.0000
59 V A 0.6300
60 T A 0.0000
61 K A -0.5750
62 N A -0.6334
63 T A 0.0000
64 R A 0.0000
65 Q A -0.2968
66 F A 0.0000
67 I A -0.3572
68 C A 0.0000
69 D A -2.0201
70 I A -1.0037
71 K A -0.7715
72 N A -0.7735
73 G A -0.3911
74 H A 0.0000
75 L A 0.8018
76 Y A -0.0840
77 K A -1.4512
78 S A -0.5093
79 E A -0.0875
80 V A 1.0965
81 L A 0.5586
82 N A -1.2281
83 T A -1.0783
84 G A -1.6273
85 D A -2.2780
86 T A -1.3396
87 A A 0.0000
88 H A -0.9582
89 R A -1.1492
90 Q A 0.1703
91 Y A 0.6435
92 A A 0.0000
93 I A 0.0000
94 T A 0.0000
95 T A 0.0000
96 P A 0.0000
97 W A 0.0000
98 S A 0.0000
99 Y A 0.0000
100 F A 0.0000
101 N A 0.0000
102 F A 0.0000
103 N A 0.0000
104 Q A -0.3458
105 Y A 0.0000
106 S A 0.0000
107 S A 0.0000
108 H A 0.0000
109 F A 0.0000
110 S A -0.7388
111 P A -0.8843
112 N A -1.6381
113 D A -1.0145
114 W A 0.0000
115 Q A -1.3384
116 H A -1.4539
117 L A 0.0000
118 V A 0.0000
119 N A -1.1188
120 D A -2.7434
121 Y A 0.0000
122 E A 0.0000
123 R A -1.8762
124 F A 0.0000
125 R A -1.3820
126 P A 0.0000
127 K A -1.9078
128 A A -1.0793
129 M A 0.0000
130 I A -0.3464
131 V A 0.0000
132 R A -1.3872
133 V A 0.0000
134 Y A 0.0000
135 N A -0.8900
136 L A 0.0000
137 Q A -1.0689
138 I A 0.0000
139 K A -0.6966
140 Q A -0.2455
141 I A 0.5838
142 M A 0.6016
143 T A -0.0775
144 D A -1.3412
145 G A -0.8276
146 A A -0.0655
147 M A 0.9357
148 G A 0.5144
149 T A 1.0803
150 V A 2.1469
151 Y A 1.4332
152 N A -0.6597
153 N A -1.4845
154 D A -0.7777
155 L A 0.2027
156 T A -0.1188
157 A A 0.0000
158 G A -0.4705
159 M A 0.0000
160 H A -0.3325
161 I A 0.0000
162 F A 0.0000
163 C A -0.5402
164 D A 0.0000
165 G A -1.5461
166 D A -2.5875
167 H A -1.9289
168 R A -1.8706
169 Y A 0.0000
170 P A 0.1302
171 Y A -0.1487
172 V A 0.1039
173 Q A 0.0000
174 H A -1.0455
175 P A 0.0000
176 W A -0.5268
177 D A -1.3404
178 D A -1.8323
179 Q A -1.7160
180 C A -1.0300
181 M A 0.0000
182 P A -0.5771
183 E A -0.2907
184 L A 0.0879
185 P A -0.5551
186 N A -1.0441
187 S A -0.1194
188 I A 0.3689
189 W A 0.0000
190 E A -1.8332
191 L A 0.0000
192 P A -1.2179
193 Q A -1.0287
194 Y A 0.0000
195 A A -0.0160
196 Y A 0.0000
197 I A 1.6095
198 P A 1.0821
199 A A 0.6137
200 P A 0.4767
201 I A 0.1362
202 S A 0.0000
203 V A 0.0000
204 V A -1.3027
205 D A -2.2649
206 N A -2.0863
207 N A -1.9749
208 T A -0.9764
209 T A -0.9202
210 N A -1.2703
211 T A -0.6357
212 V A -0.6714
213 E A 0.0000
214 E A -1.7474
215 H A -1.4963
216 L A -0.8270
217 L A -0.9792
218 K A -1.9621
219 G A -1.0066
220 V A 0.0520
221 P A 0.6054
222 L A 1.9557
223 Y A 0.9136
224 M A 0.2225
225 L A 0.0000
226 E A -2.2870
227 N A -2.2045
228 S A -2.1143
229 D A -2.4857
230 H A -1.5962
231 E A -0.6203
232 V A 0.4062
233 L A 0.0000
234 R A -1.5815
235 T A -1.0515
236 G A -0.6137
237 E A -0.8569
238 S A -1.1706
239 T A -1.1046
240 E A -1.8899
241 F A -0.6368
242 T A -0.4908
243 F A -0.5847
244 N A -1.8440
245 F A 0.0000
246 G A -2.3357
247 D A -2.7917
248 C A 0.0000
249 E A -2.3703
250 W A -1.4717
251 I A 0.0000
252 E A -1.2459
253 N A 0.0000
254 N A 0.0000
255 I A 0.0000
256 T A 0.0000
257 F A 2.1502
258 S A 1.8934
259 M A 1.5414
260 P A 0.0000
261 Q A -0.2531
262 M A 0.9016
263 M A 1.1439
264 Y A 0.5345
265 N A -0.0400
266 P A 0.4367
267 L A 1.6088
268 V A 1.1822
269 R A -1.4912
270 S A -1.8887
271 R A -2.7703
272 R A -2.3766
273 I A -0.2510
274 Y A 0.2464
275 S A -0.0884
276 Y A -0.1124
277 S A -1.2473
278 G A 0.0000
279 P A -1.5045
280 N A -2.3527
281 N A -2.6147
282 Q A -2.2285
283 T A -1.4143
284 S A -1.0585
285 N A -0.6531
286 A A -0.3371
287 F A -0.5716
288 Q A -1.0946
289 N A -1.1878
290 A A -0.4146
291 A A 0.2779
292 L A 0.5181
293 R A -1.7159
294 T A -1.0370
295 S A -0.8745
296 N A -1.4104
297 W A -0.4689
298 M A -0.0270
299 S A 0.0369
300 G A 0.0000
301 P A 0.7463
302 G A 0.0514
303 I A -0.6416
304 A A 0.0000
305 R A -2.4520
306 G A -1.1077
307 T A -0.8024
308 H A -0.0823
309 N A -0.3372
310 A A -0.2103
311 T A -0.2514
312 L A -0.2409
313 Q A -1.1332
314 T A -1.1719
315 Q A -0.6470
316 S A 0.0947
317 A A -0.1156
318 G A 0.0360
319 A A -0.3049
320 L A 0.6991
321 V A 1.1627
322 T A 1.1423
323 M A 1.6682
324 V A 1.7405
325 T A 0.0873
326 N A -1.0820
327 G A -0.9408
328 A A -1.3704
329 D A -1.9918
330 V A -0.9152
331 S A -0.5506
332 G A -0.4509
333 V A 0.2264
334 G A -0.1111
335 A A 0.4769
336 V A 0.5268
337 R A -0.1620
338 V A 0.0000
339 G A 0.0000
340 Y A 1.1564
341 S A 0.5006
342 T A -0.1175
343 D A -0.8178
344 P A 0.0000
345 I A -0.3357
346 Y A 0.0000
347 G A 0.0000
348 G A 0.0000
349 Q A 0.0000
350 Q A -1.9059
351 P A 0.0000
352 D A -2.7759
353 S A -1.7550
354 D A -1.4719
355 L A 0.2058
356 L A 0.0000
357 R A -0.4843
358 L A -0.5680
359 R A -0.7683
360 Y A -0.4467
361 S A -0.7251
362 A A -0.6336
363 S A -1.3774
364 A A -1.3483
365 A A -1.5988
366 E A -2.5204
367 G A -2.1822
368 Q A -2.5924
369 Q A -2.3846
370 N A -1.5749
371 P A -1.3045
372 I A 0.0000
373 L A -0.6911
374 E A 0.0000
375 N A -0.7844
376 A A -0.8121
377 A A -0.9995
378 R A -1.7705
379 H A -0.3801
380 T A 0.0000
381 F A 1.4979
382 T A 0.0000
383 R A -0.4928
384 E A -1.0575
385 A A -1.1029
386 R A -2.9358
387 T A -1.8672
388 K A -1.9734
389 L A 0.7043
390 I A 1.0069
391 T A 0.1572
392 G A -0.5464
393 S A -0.8977
394 N A -1.6519
395 G A -0.9894
396 A A -0.9426
397 D A -1.4718
398 G A -1.1651
399 N A -2.2788
400 Y A -1.5972
401 K A -2.5789
402 E A -0.9430
403 W A 0.0000
404 W A 1.5170
405 M A 1.5898
406 L A 1.0763
407 P A -0.1779
408 N A -0.7374
409 Q A -0.0566
410 M A 0.0380
411 W A 0.4326
412 D A -0.1536
413 S A -0.5530
414 A A 0.0000
415 P A 0.0000
416 I A 0.0000
417 S A 0.0000
418 R A 0.0000
419 Y A 0.0000
420 N A 0.0000
421 P A 0.0000
422 I A 0.0000
423 W A 0.0000
424 V A -0.2341
425 K A -0.8389
426 V A -0.5856
427 P A -1.2442
428 R A -1.8321
429 V A -0.6830
430 N A -2.1217
431 R A -2.9470
432 K A -2.1618
433 T A -0.4045
434 L A 1.3293
435 L A 0.5586
436 D A -0.2600
437 T A -0.3189
438 Q A -0.7473
439 D A -0.5932
440 G A -0.4894
441 S A 0.0000
442 I A 0.0000
443 P A -0.6027
444 M A 0.0000
445 S A -1.1666
446 H A -1.7485
447 P A 0.0000
448 P A 0.0000
449 G A -0.7729
450 T A 0.0000
451 I A 0.0000
452 F A 0.0000
453 I A 0.0000
454 K A -0.4748
455 L A 0.0000
456 A A -0.0986
457 R A -0.6279
458 I A -0.0422
459 P A -0.6623
460 V A -0.5178
461 P A -1.1006
462 G A -1.5674
463 N A -2.4028
464 G A -2.0917
465 D A -2.5756
466 S A -1.6038
467 F A -0.6243
468 L A 0.1646
469 N A -0.7156
470 I A 0.0000
471 Y A -0.5717
472 V A 0.0000
473 T A -0.4322
474 G A 0.0000
475 Q A -0.3289
476 V A 0.0000
477 S A 0.0000
478 C A 0.0000
479 E A -0.6688
480 V A 0.0000
481 V A -0.1818
482 W A 0.0000
483 E A -1.2748
484 V A 0.0000
485 E A -3.0404
486 K A -4.0012
487 R A -3.3852
488 G A -2.4118
489 T A -1.3485
490 K A -1.8432
491 N A -1.3631
492 W A -0.5371
493 R A -1.8609
494 P A -0.9923
495 E A -0.4836
496 Y A 0.6564
497 M A 0.1747
498 H A 0.0000
499 S A -0.3666
500 A A -0.3709
501 T A -0.4760
502 N A -1.0286
503 M A -0.5843
504 S A -0.0724
505 V A 1.0672
506 D A -0.2461
507 A A 0.2153
508 Y A 0.4855
509 T A 0.9758
510 I A 1.5496
511 N A -0.5766
512 N A -1.1780
513 A A -0.2090
514 G A 0.3537
515 V A 1.7476
516 Y A 1.4439
517 A A 0.6329
518 G A -0.0652
519 A A -0.6908
520 V A -0.6945
521 Q A -1.5139
522 N A -1.2152
523 A A -0.9222
524 D A 0.0000
525 V A 0.0000
526 M A 0.0000
527 Q A 0.0000
528 T A 0.0000
529 R A 0.0000
530 F A 0.0027
531 N A 0.0000
532 H A 0.0000
533 H A 0.1130
534 K A 0.5361
535 V A 2.3201
536 L A 2.4519
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.1941 4.0598 View CSV PDB
4.5 -0.2438 4.0612 View CSV PDB
5.0 -0.3018 4.0651 View CSV PDB
5.5 -0.3598 4.0744 View CSV PDB
6.0 -0.4099 4.0911 View CSV PDB
6.5 -0.4463 4.1128 View CSV PDB
7.0 -0.4695 4.134 View CSV PDB
7.5 -0.4848 4.1513 View CSV PDB
8.0 -0.4952 4.1656 View CSV PDB
8.5 -0.4993 4.1784 View CSV PDB
9.0 -0.4947 4.1906 View CSV PDB