Project name: mi2699_6T13_monomer_conf1

Status: done

Started: 2026-05-29 17:06:00
Chain sequence(s) A: ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:04:47)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/cfe1a986778a908/tmp/folded.pdb                (00:04:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:48)
Show buried residues

Minimal score value
-3.2969
Maximal score value
2.8479
Average score
-0.4866
Total score value
-241.8399

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 A A -1.3407
2 R A -1.5489
3 P A -1.0438
4 C A -0.1937
5 I A 0.6435
6 P A -0.1090
7 K A -0.6131
8 S A -0.1256
9 F A 0.5539
10 G A 0.0949
11 Y A 0.6042
12 S A -0.2538
13 S A 0.0000
14 V A -0.0889
15 V A 0.0000
16 C A 0.0000
17 V A 0.2705
18 C A 0.0000
19 N A -0.9673
20 A A -0.5555
21 T A -0.0165
22 Y A 0.2241
23 C A 0.0000
24 D A 0.0000
25 S A -1.6325
26 F A -2.0291
27 D A -2.5915
28 P A -1.8337
29 P A -0.8136
30 T A 0.4846
31 F A 2.0658
32 P A 0.0000
33 A A 1.1688
34 L A 1.4953
35 G A 0.4164
36 T A 0.5528
37 F A 0.0000
38 S A 0.0000
39 R A -0.1325
40 Y A -0.2147
41 E A -1.0162
42 S A -1.1345
43 T A -1.6809
44 R A -2.0167
45 S A -1.3169
46 G A -1.1482
47 R A -2.0543
48 R A 0.0000
49 M A -0.9360
50 E A -1.0642
51 L A -0.0098
52 S A 0.1907
53 M A 0.7642
54 G A -0.3228
55 P A -0.3787
56 I A -0.5216
57 Q A -1.5153
58 A A -0.9690
59 N A -1.6799
60 H A -1.4109
61 T A -0.7795
62 G A -0.9892
63 T A -0.4873
64 G A -0.6333
65 L A -0.5460
66 L A -0.1505
67 L A 0.0000
68 T A 0.1607
69 L A 0.0000
70 Q A -1.4186
71 P A -1.8208
72 E A -2.9608
73 Q A -2.8820
74 K A -2.8811
75 F A -1.2833
76 Q A -1.7084
77 K A -2.3695
78 V A 0.0000
79 K A -1.0126
80 G A 0.0000
81 F A 0.0000
82 G A 0.0000
83 G A 0.0000
84 A A 0.0000
85 M A 0.0000
86 T A 0.0000
87 D A 0.0000
88 A A 0.0000
89 A A 0.0000
90 A A 0.0000
91 L A 0.9624
92 N A 0.0000
93 I A 0.0000
94 L A 0.6174
95 A A 0.3874
96 L A 0.0000
97 S A -0.4598
98 P A -0.4157
99 P A -0.4811
100 A A 0.0000
101 Q A 0.0000
102 N A -0.7066
103 L A -0.4301
104 L A 0.0000
105 L A 0.0000
106 K A -1.5024
107 S A 0.0000
108 Y A 0.0000
109 F A 0.0000
110 S A 0.0000
111 E A -3.2969
112 E A -3.0400
113 G A 0.0000
114 I A 0.0000
115 G A -1.1824
116 Y A 0.0000
117 N A 0.0000
118 I A 0.0000
119 I A 0.0000
120 R A 0.0000
121 V A 0.0000
122 P A 0.0000
123 M A 0.0000
124 A A 0.0000
125 S A -0.1914
126 C A 0.0000
127 D A -0.2500
128 F A 0.0000
129 S A 0.0000
130 I A 0.6621
131 R A -1.1043
132 T A -0.6086
133 Y A 0.0000
134 T A -0.4723
135 Y A 0.0000
136 A A 0.0000
137 D A -2.2996
138 T A -1.8091
139 P A -1.5490
140 D A -2.2391
141 D A -2.1075
142 F A -1.1837
143 Q A -1.8514
144 L A 0.0000
145 H A -1.9558
146 N A -2.1379
147 F A -1.3079
148 S A -0.7471
149 L A -0.6010
150 P A -1.2004
151 E A -2.4404
152 E A -1.3966
153 D A 0.0000
154 T A -1.5303
155 K A -2.2835
156 L A -0.8961
157 K A 0.0000
158 I A 0.0000
159 P A -0.6376
160 L A 0.0000
161 I A 0.0000
162 H A -0.9177
163 R A -0.9126
164 A A 0.0000
165 L A -0.4184
166 Q A -1.2887
167 L A -1.1048
168 A A -1.3467
169 Q A -2.0850
170 R A -1.5631
171 P A -0.7917
172 V A -0.2039
173 S A -0.1327
174 L A 0.0000
175 L A 0.0000
176 A A 0.0000
177 S A 0.0000
178 P A 0.0000
179 W A 0.0136
180 T A 0.2093
181 S A 0.0000
182 P A 0.0000
183 T A -0.2455
184 W A -0.7261
185 L A 0.0000
186 K A 0.0000
187 T A -1.1513
188 N A -1.5951
189 G A -0.9125
190 A A -0.3071
191 V A 0.6030
192 N A -1.0838
193 G A -1.3653
194 K A -1.0984
195 G A -0.9388
196 S A -0.7093
197 L A 0.0000
198 K A -1.2242
199 G A -1.3864
200 Q A -1.8341
201 P A -1.6875
202 G A -1.6880
203 D A -1.3807
204 I A 0.0868
205 Y A -0.2716
206 H A 0.0000
207 Q A -0.7251
208 T A 0.0000
209 W A 0.0000
210 A A 0.0000
211 R A -0.6099
212 Y A 0.0000
213 F A 0.0000
214 V A -0.4588
215 K A -0.9539
216 F A 0.0000
217 L A 0.0000
218 D A -2.0274
219 A A -1.5175
220 Y A 0.0000
221 A A -2.3978
222 E A -2.9160
223 H A -2.3669
224 K A -2.8699
225 L A 0.0000
226 Q A -1.9033
227 F A -0.5908
228 W A -0.4686
229 A A 0.0000
230 V A 0.0000
231 T A 0.0000
232 A A 0.0000
233 E A 0.0000
234 N A -0.2897
235 E A -0.4397
236 P A 0.0000
237 S A 0.3436
238 A A 0.0000
239 G A 0.0000
240 L A 0.9206
241 L A 1.0418
242 S A 0.3603
243 G A 0.1854
244 Y A 1.2280
245 P A 0.4556
246 F A 0.6036
247 Q A -0.3094
248 C A -0.0678
249 L A 0.0000
250 G A 0.0160
251 F A 0.0000
252 T A -0.6130
253 P A -1.1926
254 E A -2.0983
255 H A -1.3538
256 Q A 0.0000
257 R A -1.6250
258 D A -1.8874
259 F A 0.0000
260 I A 0.0000
261 A A -1.8396
262 R A -2.4335
263 D A 0.0000
264 L A 0.0000
265 G A 0.0000
266 P A -0.9706
267 T A -0.8725
268 L A 0.0000
269 A A -1.1923
270 N A -1.5170
271 S A -1.2729
272 T A -0.9968
273 H A -1.4747
274 H A -1.8600
275 N A -1.8481
276 V A 0.0000
277 R A -1.3588
278 L A 0.0000
279 L A 0.0000
280 M A 0.0000
281 L A 0.0000
282 D A 0.0000
283 D A 0.0000
284 Q A 0.0000
285 R A 0.0000
286 L A 1.2652
287 L A 0.3705
288 L A 0.0000
289 P A -0.5946
290 H A -0.8215
291 W A 0.0000
292 A A 0.0000
293 K A -1.1911
294 V A -0.9635
295 V A 0.0000
296 L A -0.7367
297 T A -0.6162
298 D A -1.5968
299 P A -1.4500
300 E A -2.1686
301 A A 0.0000
302 A A -1.4813
303 K A -2.1035
304 Y A -1.3217
305 V A 0.0000
306 H A -1.0611
307 G A 0.0000
308 I A 0.0000
309 A A 0.0000
310 V A 0.0000
311 H A 0.0000
312 W A 0.6699
313 Y A 0.9772
314 L A 1.8982
315 D A 1.6782
316 F A 2.8479
317 L A 2.7220
318 A A 0.0000
319 P A 0.1723
320 A A -0.4942
321 K A -1.9059
322 A A -1.0636
323 T A 0.0000
324 L A 0.0000
325 G A 0.0000
326 E A -1.8145
327 T A 0.0000
328 H A -1.4477
329 R A -1.8922
330 L A -0.6367
331 F A -0.6502
332 P A -1.0787
333 N A -1.3107
334 T A -0.5344
335 M A -0.4978
336 L A 0.0000
337 F A 0.0000
338 A A 0.0000
339 S A 0.0000
340 E A 0.0000
341 A A 0.0000
342 C A 0.0000
343 V A 0.0000
344 G A 0.0000
345 S A -0.3241
346 K A 0.0879
347 F A 1.4827
348 W A 1.2442
349 E A -0.3331
350 Q A -1.2021
351 S A -1.3899
352 V A 0.0000
353 R A -1.0753
354 L A -0.0472
355 G A 0.0000
356 S A -0.5567
357 W A -0.8169
358 D A -1.8121
359 R A 0.0000
360 G A 0.0000
361 M A 0.0000
362 Q A -0.9107
363 Y A 0.0000
364 S A 0.0000
365 H A -0.8056
366 S A 0.0000
367 I A 0.0000
368 I A 0.0000
369 T A 0.0091
370 N A 0.0000
371 L A 0.0000
372 L A 0.3498
373 Y A -0.0362
374 H A -0.1231
375 V A 0.0000
376 V A 0.0000
377 G A 0.0000
378 W A 0.0000
379 T A 0.0000
380 D A 0.0000
381 W A 0.0000
382 N A 0.0000
383 L A 0.0000
384 A A 0.0000
385 L A 0.0000
386 N A -0.7479
387 P A -1.1781
388 E A -2.5480
389 G A 0.0000
390 G A 0.0000
391 P A -0.2699
392 N A -0.3666
393 W A 0.8500
394 V A 0.5844
395 R A -1.8289
396 N A -1.7203
397 F A -1.4596
398 V A 0.0000
399 D A 0.0000
400 S A 0.0000
401 P A 0.0000
402 I A 0.0000
403 I A 0.0000
404 V A 0.0000
405 D A -0.9712
406 I A -0.2355
407 T A -0.9034
408 K A -2.2972
409 D A -2.2919
410 T A 0.0000
411 F A 0.0000
412 Y A 0.0000
413 K A 0.0000
414 Q A 0.0000
415 P A 0.0000
416 M A 0.0000
417 F A 0.0000
418 Y A 0.0000
419 H A 0.0000
420 L A 0.0000
421 G A 0.0000
422 H A 0.0000
423 F A 0.0000
424 S A 0.0000
425 K A -0.6220
426 F A -0.0206
427 I A 0.0000
428 P A -0.7203
429 E A -1.1119
430 G A -1.3481
431 S A 0.0000
432 Q A -1.6243
433 R A 0.0000
434 V A 0.0000
435 G A 0.0000
436 L A 0.4985
437 V A 1.2247
438 A A 0.1133
439 S A -0.5277
440 Q A -1.4853
441 K A -2.5898
442 N A -2.3404
443 D A -2.6075
444 L A -1.4922
445 D A -1.2141
446 A A -0.1617
447 V A 0.0000
448 A A 0.0000
449 L A 0.0000
450 M A 0.0000
451 H A -1.3542
452 P A -1.5055
453 D A -2.3425
454 G A -1.6590
455 S A 0.0000
456 A A 0.0000
457 V A 0.0000
458 V A 0.0000
459 V A 0.0000
460 V A 0.0000
461 L A 0.0000
462 N A 0.0000
463 R A -1.7763
464 S A -1.5147
465 S A -1.3381
466 K A -2.6458
467 D A -2.2016
468 V A -0.9229
469 P A -0.5535
470 L A 0.0000
471 T A 0.0000
472 I A 0.0000
473 K A -0.7744
474 D A 0.0000
475 P A -0.3506
476 A A 0.0074
477 V A 0.3129
478 G A -0.6244
479 F A -0.9839
480 L A 0.0000
481 E A -1.6656
482 T A 0.0000
483 I A 0.4128
484 S A 0.0000
485 P A -0.9167
486 G A -1.0231
487 Y A -0.2120
488 S A 0.0000
489 I A 0.0000
490 H A 0.0000
491 T A 0.0000
492 Y A 0.0000
493 L A 0.0000
494 W A 0.0000
495 H A -0.2138
496 R A -0.9805
497 Q A -1.6874
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.2074 5.927 View CSV PDB
4.5 -0.2468 5.9056 View CSV PDB
5.0 -0.2937 5.8827 View CSV PDB
5.5 -0.3396 5.8592 View CSV PDB
6.0 -0.3761 5.8356 View CSV PDB
6.5 -0.3969 5.8119 View CSV PDB
7.0 -0.4018 5.7885 View CSV PDB
7.5 -0.3961 5.7657 View CSV PDB
8.0 -0.3842 5.7447 View CSV PDB
8.5 -0.3669 5.7279 View CSV PDB
9.0 -0.3434 5.7173 View CSV PDB