Chain sequence(s) |
A: MSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDLVPRGSPGGSMGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRHGVVSCSGVARGSGEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKNHARQAGVRGLGHQSGGSHHHHHH
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] PDB-Info: The input structure is partially or entirely disordered. Average score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:02) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:08:44) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/d0176fb718ff4f0/tmp/folded.pdb (00:08:44) [INFO] Main: Simulation completed successfully. (00:11:32) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.5606 | |
2 | S | A | -0.4956 | |
3 | P | A | 0.0000 | |
4 | I | A | -0.7759 | |
5 | L | A | 0.0000 | |
6 | G | A | 0.0000 | |
7 | Y | A | 0.0000 | |
8 | W | A | -0.8149 | |
9 | K | A | -1.3528 | |
10 | I | A | 0.0000 | |
11 | K | A | 0.0000 | |
12 | G | A | 0.0000 | |
13 | L | A | 0.1661 | |
14 | V | A | 0.0000 | |
15 | Q | A | 0.0000 | |
16 | P | A | 0.0000 | |
17 | T | A | 0.0000 | |
18 | R | A | 0.0000 | |
19 | L | A | 0.0000 | |
20 | L | A | 0.0000 | |
21 | L | A | 0.0000 | |
22 | E | A | -1.3410 | |
23 | Y | A | -0.7450 | |
24 | L | A | -1.0035 | |
25 | E | A | -2.2857 | |
26 | E | A | -2.0620 | |
27 | K | A | -2.4520 | |
28 | Y | A | -1.7479 | |
29 | E | A | -1.9763 | |
30 | E | A | -1.5512 | |
31 | H | A | -0.7797 | |
32 | L | A | -0.7917 | |
33 | Y | A | 0.0000 | |
34 | E | A | -3.0114 | |
35 | R | A | -3.6722 | |
36 | D | A | -3.6725 | |
37 | E | A | -3.3516 | |
38 | G | A | 0.0000 | |
39 | D | A | -3.6771 | |
40 | K | A | -3.5365 | |
41 | W | A | 0.0000 | |
42 | R | A | -2.9446 | |
43 | N | A | -3.0001 | |
44 | K | A | -2.3774 | |
45 | K | A | -1.2006 | |
46 | F | A | 0.1702 | |
47 | E | A | -1.5973 | |
48 | L | A | -0.9341 | |
49 | G | A | -0.8973 | |
50 | L | A | 0.0000 | |
51 | E | A | -0.8597 | |
52 | F | A | 0.8955 | |
53 | P | A | 0.0063 | |
54 | N | A | -0.1178 | |
55 | L | A | 0.0000 | |
56 | P | A | 0.0000 | |
57 | Y | A | 0.0000 | |
58 | Y | A | 0.0000 | |
59 | I | A | 0.0000 | |
60 | D | A | -0.7272 | |
61 | G | A | -1.2389 | |
62 | D | A | -2.0788 | |
63 | V | A | -1.0077 | |
64 | K | A | -1.2483 | |
65 | L | A | -0.4979 | |
66 | T | A | -0.4811 | |
67 | Q | A | -1.0354 | |
68 | S | A | -0.5686 | |
69 | M | A | -0.3781 | |
70 | A | A | -0.4709 | |
71 | I | A | 0.0000 | |
72 | I | A | 0.0000 | |
73 | R | A | -1.3944 | |
74 | Y | A | -1.1742 | |
75 | I | A | 0.0000 | |
76 | A | A | 0.0000 | |
77 | D | A | -3.1096 | |
78 | K | A | -2.8117 | |
79 | H | A | -2.2425 | |
80 | N | A | -2.4965 | |
81 | M | A | -1.7397 | |
82 | L | A | -1.7057 | |
83 | G | A | -1.7460 | |
84 | G | A | -1.1963 | |
85 | C | A | -1.0762 | |
86 | P | A | -1.7268 | |
87 | K | A | -2.7588 | |
88 | E | A | -2.4880 | |
89 | R | A | -2.2040 | |
90 | A | A | -1.6811 | |
91 | E | A | -2.0113 | |
92 | I | A | 0.0000 | |
93 | S | A | -0.8318 | |
94 | M | A | -0.1194 | |
95 | L | A | 0.0000 | |
96 | E | A | 0.0000 | |
97 | G | A | -0.2437 | |
98 | A | A | -0.3900 | |
99 | V | A | 0.0000 | |
100 | L | A | -0.5745 | |
101 | D | A | -1.5195 | |
102 | I | A | 0.0000 | |
103 | R | A | 0.0000 | |
104 | Y | A | -0.5688 | |
105 | G | A | -1.2237 | |
106 | V | A | 0.0000 | |
107 | S | A | -0.5358 | |
108 | R | A | -1.2633 | |
109 | I | A | -1.2307 | |
110 | A | A | 0.0000 | |
111 | Y | A | -0.7456 | |
112 | S | A | -1.4650 | |
113 | K | A | -2.2322 | |
114 | D | A | -2.2315 | |
115 | F | A | 0.0000 | |
116 | E | A | -2.7825 | |
117 | T | A | 0.0000 | |
118 | L | A | -1.5864 | |
119 | K | A | -1.2865 | |
120 | V | A | -1.4767 | |
121 | D | A | -2.1914 | |
122 | F | A | 0.0000 | |
123 | L | A | 0.0000 | |
124 | S | A | -1.7149 | |
125 | K | A | -2.6409 | |
126 | L | A | 0.0000 | |
127 | P | A | -1.7892 | |
128 | E | A | -2.7075 | |
129 | M | A | -1.7473 | |
130 | L | A | 0.0000 | |
131 | K | A | -2.1998 | |
132 | M | A | -1.1710 | |
133 | F | A | 0.0000 | |
134 | E | A | 0.0000 | |
135 | D | A | -1.9486 | |
136 | R | A | -1.3876 | |
137 | L | A | 0.0000 | |
138 | C | A | -0.9681 | |
139 | H | A | -1.6514 | |
140 | K | A | -1.9450 | |
141 | T | A | -1.4464 | |
142 | Y | A | -1.2188 | |
143 | L | A | 0.0000 | |
144 | N | A | -1.4436 | |
145 | G | A | -1.8173 | |
146 | D | A | -2.6322 | |
147 | H | A | -2.0019 | |
148 | V | A | 0.0000 | |
149 | T | A | 0.0000 | |
150 | H | A | 0.0000 | |
151 | P | A | 0.0000 | |
152 | D | A | 0.0000 | |
153 | F | A | 0.0000 | |
154 | M | A | 0.0000 | |
155 | L | A | 0.0000 | |
156 | Y | A | 0.0000 | |
157 | D | A | 0.0000 | |
158 | A | A | 0.0000 | |
159 | L | A | 0.0000 | |
160 | D | A | 0.0000 | |
161 | V | A | 0.0000 | |
162 | V | A | 0.0000 | |
163 | L | A | 0.4056 | |
164 | Y | A | 0.5020 | |
165 | M | A | 0.0000 | |
166 | D | A | -0.0097 | |
167 | P | A | -0.0146 | |
168 | M | A | -0.5478 | |
169 | C | A | -0.4489 | |
170 | L | A | 0.0000 | |
171 | D | A | -1.6640 | |
172 | A | A | -1.0025 | |
173 | F | A | 0.0000 | |
174 | P | A | -0.4244 | |
175 | K | A | -0.8936 | |
176 | L | A | 0.0000 | |
177 | V | A | 0.0899 | |
178 | C | A | -0.0207 | |
179 | F | A | 0.0000 | |
180 | K | A | 0.0000 | |
181 | K | A | -1.7314 | |
182 | R | A | -1.2554 | |
183 | I | A | 0.0000 | |
184 | E | A | -1.4131 | |
185 | A | A | -1.2069 | |
186 | I | A | -0.8422 | |
187 | P | A | -0.9686 | |
188 | Q | A | -1.3680 | |
189 | I | A | 0.0000 | |
190 | D | A | -1.9665 | |
191 | K | A | -2.6332 | |
192 | Y | A | 0.0000 | |
193 | L | A | -1.6846 | |
194 | K | A | -2.6390 | |
195 | S | A | -1.9062 | |
196 | S | A | -1.4614 | |
197 | K | A | -1.9293 | |
198 | Y | A | -1.0519 | |
199 | I | A | 0.0000 | |
200 | A | A | -0.2214 | |
201 | W | A | -0.5846 | |
202 | P | A | 0.0000 | |
203 | L | A | 0.0000 | |
204 | Q | A | 0.0000 | |
205 | G | A | 0.0000 | |
206 | W | A | -1.4357 | |
207 | Q | A | -1.1705 | |
208 | A | A | 0.0000 | |
209 | T | A | -0.9180 | |
210 | F | A | 0.0000 | |
211 | G | A | 0.0000 | |
212 | G | A | -0.9316 | |
213 | G | A | -1.7811 | |
214 | D | A | -2.6831 | |
215 | H | A | -2.2514 | |
216 | P | A | -1.2860 | |
217 | P | A | -1.6533 | |
218 | K | A | -2.2448 | |
219 | S | A | -1.7143 | |
220 | D | A | -2.4129 | |
221 | L | A | -0.5081 | |
222 | V | A | -0.2093 | |
223 | P | A | -0.7878 | |
224 | R | A | -2.0917 | |
225 | G | A | -1.6488 | |
226 | S | A | -1.3138 | |
227 | P | A | -1.1071 | |
228 | G | A | -0.9641 | |
229 | G | A | -0.6635 | |
230 | S | A | -0.1926 | |
231 | M | A | 0.3365 | |
232 | G | A | -0.7720 | |
233 | P | A | -2.0774 | |
234 | K | A | -3.2468 | |
235 | R | A | -3.4417 | |
236 | R | A | -3.0651 | |
237 | Q | A | -2.5485 | |
238 | L | A | 0.0000 | |
239 | T | A | 0.0000 | |
240 | F | A | 0.0000 | |
241 | R | A | -0.9055 | |
242 | E | A | -0.9358 | |
243 | K | A | -1.0469 | |
244 | S | A | 0.0000 | |
245 | R | A | -1.3547 | |
246 | I | A | 0.0000 | |
247 | I | A | 0.0000 | |
248 | Q | A | -2.5061 | |
249 | E | A | -2.2651 | |
250 | V | A | 0.0000 | |
251 | E | A | -3.4887 | |
252 | E | A | -3.4243 | |
253 | N | A | -2.8667 | |
254 | P | A | -2.6227 | |
255 | D | A | -2.8415 | |
256 | L | A | -2.5892 | |
257 | R | A | -3.2625 | |
258 | K | A | -3.4037 | |
259 | G | A | -2.8376 | |
260 | E | A | -3.6144 | |
261 | I | A | 0.0000 | |
262 | A | A | 0.0000 | |
263 | R | A | -3.8260 | |
264 | R | A | -3.4663 | |
265 | F | A | -2.0864 | |
266 | N | A | -2.6875 | |
267 | I | A | 0.0000 | |
268 | P | A | -1.2412 | |
269 | P | A | -1.4466 | |
270 | S | A | -0.5009 | |
271 | T | A | -0.6120 | |
272 | L | A | 0.0000 | |
273 | S | A | -1.0795 | |
274 | T | A | -0.9351 | |
275 | I | A | 0.0000 | |
276 | L | A | -1.2072 | |
277 | K | A | -2.2385 | |
278 | N | A | -1.8960 | |
279 | K | A | -2.0418 | |
280 | R | A | -2.3172 | |
281 | A | A | -1.5618 | |
282 | I | A | 0.0000 | |
283 | L | A | -1.5411 | |
284 | A | A | -1.5524 | |
285 | S | A | 0.0000 | |
286 | E | A | -2.0125 | |
287 | R | A | -2.6931 | |
288 | K | A | -2.5288 | |
289 | Y | A | -1.4802 | |
290 | G | A | -1.1209 | |
291 | V | A | -0.5448 | |
292 | A | A | -0.9336 | |
293 | S | A | 0.0000 | |
294 | T | A | -0.1602 | |
295 | C | A | -0.5049 | |
296 | R | A | -1.3930 | |
297 | K | A | -2.0528 | |
298 | T | A | -1.7096 | |
299 | N | A | -1.9747 | |
300 | K | A | -1.8970 | |
301 | L | A | -0.1860 | |
302 | S | A | 0.0000 | |
303 | P | A | -0.5794 | |
304 | Y | A | -0.7483 | |
305 | D | A | -1.6703 | |
306 | K | A | -1.9046 | |
307 | L | A | 0.0000 | |
308 | E | A | 0.0000 | |
309 | G | A | -0.6085 | |
310 | L | A | 0.2265 | |
311 | L | A | 0.0000 | |
312 | I | A | 0.1527 | |
313 | A | A | -0.0822 | |
314 | W | A | -0.4183 | |
315 | F | A | -0.7665 | |
316 | Q | A | -1.9287 | |
317 | Q | A | -1.9285 | |
318 | I | A | 0.0000 | |
319 | R | A | -2.1295 | |
320 | A | A | -1.3741 | |
321 | A | A | -1.0481 | |
322 | G | A | -1.3826 | |
323 | L | A | 0.0000 | |
324 | P | A | -0.5460 | |
325 | V | A | 0.0000 | |
326 | K | A | 0.0837 | |
327 | G | A | 0.1357 | |
328 | I | A | 0.9921 | |
329 | I | A | -0.1456 | |
330 | L | A | 0.0000 | |
331 | K | A | -0.9965 | |
332 | E | A | -1.8821 | |
333 | K | A | -1.6233 | |
334 | A | A | 0.0000 | |
335 | L | A | -2.1021 | |
336 | R | A | -3.3523 | |
337 | I | A | 0.0000 | |
338 | A | A | 0.0000 | |
339 | E | A | -3.8361 | |
340 | E | A | -3.0489 | |
341 | L | A | -1.9736 | |
342 | G | A | -2.3188 | |
343 | M | A | -2.2790 | |
344 | D | A | -2.9814 | |
345 | D | A | -2.8538 | |
346 | F | A | 0.0000 | |
347 | T | A | -1.0814 | |
348 | A | A | 0.0000 | |
349 | S | A | -1.1716 | |
350 | N | A | -1.7147 | |
351 | G | A | -1.5929 | |
352 | W | A | 0.0000 | |
353 | L | A | 0.0000 | |
354 | D | A | -2.7364 | |
355 | R | A | -3.3631 | |
356 | F | A | 0.0000 | |
357 | R | A | -2.1494 | |
358 | R | A | -3.4339 | |
359 | R | A | -2.1757 | |
360 | H | A | -1.2939 | |
361 | G | A | -1.6264 | |
362 | V | A | 0.0000 | |
363 | V | A | -0.0377 | |
364 | S | A | 0.0385 | |
365 | C | A | 0.5575 | |
366 | S | A | 0.1957 | |
367 | G | A | 0.2603 | |
368 | V | A | 1.1012 | |
369 | A | A | -0.2769 | |
370 | R | A | -1.7500 | |
371 | G | A | -1.3752 | |
372 | S | A | -1.4522 | |
373 | G | A | -1.8389 | |
374 | E | A | -2.7015 | |
375 | G | A | -2.0267 | |
376 | D | A | -1.9547 | |
377 | V | A | -0.3358 | |
378 | D | A | -1.9800 | |
379 | S | A | -2.2268 | |
380 | D | A | -3.6452 | |
381 | E | A | -4.5424 | |
382 | E | A | -4.6894 | |
383 | E | A | -4.9989 | |
384 | E | A | -4.8557 | |
385 | E | A | -4.9616 | |
386 | D | A | -4.6413 | |
387 | E | A | -4.3061 | |
388 | E | A | -3.5206 | |
389 | S | A | -2.0849 | |
390 | S | A | -1.7153 | |
391 | S | A | -1.4074 | |
392 | E | A | -2.0754 | |
393 | G | A | -1.1418 | |
394 | L | A | -0.3415 | |
395 | E | A | -2.1362 | |
396 | A | A | -1.8411 | |
397 | E | A | -2.8348 | |
398 | D | A | -2.3538 | |
399 | W | A | -1.2461 | |
400 | A | A | -0.9583 | |
401 | Q | A | -1.4628 | |
402 | G | A | -0.8533 | |
403 | V | A | 0.0033 | |
404 | V | A | 0.2635 | |
405 | E | A | -1.4845 | |
406 | A | A | -0.5848 | |
407 | G | A | -0.4199 | |
408 | G | A | -0.2611 | |
409 | S | A | 0.2596 | |
410 | F | A | 1.5019 | |
411 | G | A | 0.3876 | |
412 | A | A | 0.7674 | |
413 | Y | A | 1.1293 | |
414 | G | A | -0.3718 | |
415 | A | A | -1.1749 | |
416 | Q | A | -2.4805 | |
417 | E | A | -3.4695 | |
418 | E | A | -3.2497 | |
419 | A | A | -1.9429 | |
420 | Q | A | -1.6337 | |
421 | C | A | -0.0202 | |
422 | P | A | 0.0378 | |
423 | T | A | 0.5660 | |
424 | L | A | 1.7585 | |
425 | H | A | 0.8576 | |
426 | F | A | 2.0539 | |
427 | L | A | 1.3389 | |
428 | E | A | -1.1824 | |
429 | G | A | -1.3522 | |
430 | G | A | -2.2215 | |
431 | E | A | -3.2482 | |
432 | D | A | -3.2569 | |
433 | S | A | -2.5296 | |
434 | D | A | -2.7684 | |
435 | S | A | -2.1982 | |
436 | D | A | -2.7911 | |
437 | S | A | -2.4078 | |
438 | E | A | -3.5865 | |
439 | E | A | -4.1293 | |
440 | E | A | -4.5544 | |
441 | D | A | -4.4941 | |
442 | D | A | -4.3431 | |
443 | E | A | -4.3468 | |
444 | E | A | -4.4403 | |
445 | E | A | -4.4468 | |
446 | D | A | -4.4153 | |
447 | D | A | -4.4086 | |
448 | E | A | -4.5839 | |
449 | D | A | -4.5734 | |
450 | E | A | -4.6355 | |
451 | D | A | -4.8561 | |
452 | D | A | -4.8673 | |
453 | D | A | -5.0177 | |
454 | D | A | -4.9939 | |
455 | D | A | -5.1420 | |
456 | E | A | -4.9368 | |
457 | E | A | -4.7338 | |
458 | D | A | -4.5160 | |
459 | G | A | -3.3619 | |
460 | D | A | -3.1692 | |
461 | E | A | -2.0664 | |
462 | V | A | 0.6084 | |
463 | P | A | 0.5896 | |
464 | V | A | 1.6402 | |
465 | P | A | 0.6591 | |
466 | S | A | -0.0026 | |
467 | F | A | 0.6275 | |
468 | G | A | -0.4802 | |
469 | E | A | -0.6943 | |
470 | A | A | 0.3613 | |
471 | M | A | 0.5992 | |
472 | A | A | 0.6873 | |
473 | Y | A | 1.4730 | |
474 | F | A | 0.0000 | |
475 | A | A | 0.9015 | |
476 | M | A | 1.8861 | |
477 | V | A | 2.1223 | |
478 | K | A | 0.5847 | |
479 | R | A | -0.1234 | |
480 | Y | A | 1.6119 | |
481 | L | A | 1.5423 | |
482 | T | A | 0.7613 | |
483 | S | A | 0.9166 | |
484 | F | A | 1.9038 | |
485 | P | A | 0.7907 | |
486 | I | A | 0.3808 | |
487 | D | A | -1.0108 | |
488 | D | A | -1.4665 | |
489 | R | A | -2.1930 | |
490 | V | A | -0.9247 | |
491 | Q | A | 0.0000 | |
492 | S | A | -1.3228 | |
493 | H | A | -1.5163 | |
494 | I | A | 0.0000 | |
495 | L | A | 0.0000 | |
496 | H | A | -1.4333 | |
497 | L | A | -0.7672 | |
498 | E | A | -0.9077 | |
499 | H | A | -1.2126 | |
500 | D | A | -1.8562 | |
501 | L | A | -0.4274 | |
502 | V | A | -0.7335 | |
503 | H | A | -1.9029 | |
504 | V | A | -0.9445 | |
505 | T | A | -1.6822 | |
506 | R | A | -3.5487 | |
507 | K | A | -3.5734 | |
508 | N | A | -3.2898 | |
509 | H | A | -3.3002 | |
510 | A | A | -2.6809 | |
511 | R | A | -3.5489 | |
512 | Q | A | -2.9924 | |
513 | A | A | -1.7908 | |
514 | G | A | -1.1452 | |
515 | V | A | 0.0629 | |
516 | R | A | -1.6433 | |
517 | G | A | -0.5984 | |
518 | L | A | 0.5361 | |
519 | G | A | -0.8006 | |
520 | H | A | -1.8458 | |
521 | Q | A | -1.7978 | |
522 | S | A | -1.4481 | |
523 | G | A | -1.2684 | |
524 | G | A | -1.2395 | |
525 | S | A | -1.2649 | |
526 | H | A | -1.8890 | |
527 | H | A | -2.2742 | |
528 | H | A | -2.4192 | |
529 | H | A | -2.3937 | |
530 | H | A | -2.2383 | |
531 | H | A | -1.7884 |
Calculations for various pH values
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | -0.8952 | 4.663 | View | CSV | PDB |
4.5 | -1.0084 | 4.643 | View | CSV | PDB |
5.0 | -1.1551 | 4.6225 | View | CSV | PDB |
5.5 | -1.3089 | 4.6018 | View | CSV | PDB |
6.0 | -1.4431 | 4.5812 | View | CSV | PDB |
6.5 | -1.5399 | 4.5607 | View | CSV | PDB |
7.0 | -1.5976 | 4.5406 | View | CSV | PDB |
7.5 | -1.6286 | 4.5221 | View | CSV | PDB |
8.0 | -1.6452 | 4.5069 | View | CSV | PDB |
8.5 | -1.6509 | 4.4969 | View | CSV | PDB |
9.0 | -1.6423 | 4.4916 | View | CSV | PDB |