Project name: d0176fb718ff4f0

Status: done

Started: 2025-05-07 05:58:40
Chain sequence(s) A: MSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDLVPRGSPGGSMGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRHGVVSCSGVARGSGEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKNHARQAGVRGLGHQSGGSHHHHHH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:08:44)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/d0176fb718ff4f0/tmp/folded.pdb                (00:08:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:32)
Show buried residues

Minimal score value
-5.142
Maximal score value
2.1223
Average score
-1.228
Total score value
-652.0787

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.5606
2 S A -0.4956
3 P A 0.0000
4 I A -0.7759
5 L A 0.0000
6 G A 0.0000
7 Y A 0.0000
8 W A -0.8149
9 K A -1.3528
10 I A 0.0000
11 K A 0.0000
12 G A 0.0000
13 L A 0.1661
14 V A 0.0000
15 Q A 0.0000
16 P A 0.0000
17 T A 0.0000
18 R A 0.0000
19 L A 0.0000
20 L A 0.0000
21 L A 0.0000
22 E A -1.3410
23 Y A -0.7450
24 L A -1.0035
25 E A -2.2857
26 E A -2.0620
27 K A -2.4520
28 Y A -1.7479
29 E A -1.9763
30 E A -1.5512
31 H A -0.7797
32 L A -0.7917
33 Y A 0.0000
34 E A -3.0114
35 R A -3.6722
36 D A -3.6725
37 E A -3.3516
38 G A 0.0000
39 D A -3.6771
40 K A -3.5365
41 W A 0.0000
42 R A -2.9446
43 N A -3.0001
44 K A -2.3774
45 K A -1.2006
46 F A 0.1702
47 E A -1.5973
48 L A -0.9341
49 G A -0.8973
50 L A 0.0000
51 E A -0.8597
52 F A 0.8955
53 P A 0.0063
54 N A -0.1178
55 L A 0.0000
56 P A 0.0000
57 Y A 0.0000
58 Y A 0.0000
59 I A 0.0000
60 D A -0.7272
61 G A -1.2389
62 D A -2.0788
63 V A -1.0077
64 K A -1.2483
65 L A -0.4979
66 T A -0.4811
67 Q A -1.0354
68 S A -0.5686
69 M A -0.3781
70 A A -0.4709
71 I A 0.0000
72 I A 0.0000
73 R A -1.3944
74 Y A -1.1742
75 I A 0.0000
76 A A 0.0000
77 D A -3.1096
78 K A -2.8117
79 H A -2.2425
80 N A -2.4965
81 M A -1.7397
82 L A -1.7057
83 G A -1.7460
84 G A -1.1963
85 C A -1.0762
86 P A -1.7268
87 K A -2.7588
88 E A -2.4880
89 R A -2.2040
90 A A -1.6811
91 E A -2.0113
92 I A 0.0000
93 S A -0.8318
94 M A -0.1194
95 L A 0.0000
96 E A 0.0000
97 G A -0.2437
98 A A -0.3900
99 V A 0.0000
100 L A -0.5745
101 D A -1.5195
102 I A 0.0000
103 R A 0.0000
104 Y A -0.5688
105 G A -1.2237
106 V A 0.0000
107 S A -0.5358
108 R A -1.2633
109 I A -1.2307
110 A A 0.0000
111 Y A -0.7456
112 S A -1.4650
113 K A -2.2322
114 D A -2.2315
115 F A 0.0000
116 E A -2.7825
117 T A 0.0000
118 L A -1.5864
119 K A -1.2865
120 V A -1.4767
121 D A -2.1914
122 F A 0.0000
123 L A 0.0000
124 S A -1.7149
125 K A -2.6409
126 L A 0.0000
127 P A -1.7892
128 E A -2.7075
129 M A -1.7473
130 L A 0.0000
131 K A -2.1998
132 M A -1.1710
133 F A 0.0000
134 E A 0.0000
135 D A -1.9486
136 R A -1.3876
137 L A 0.0000
138 C A -0.9681
139 H A -1.6514
140 K A -1.9450
141 T A -1.4464
142 Y A -1.2188
143 L A 0.0000
144 N A -1.4436
145 G A -1.8173
146 D A -2.6322
147 H A -2.0019
148 V A 0.0000
149 T A 0.0000
150 H A 0.0000
151 P A 0.0000
152 D A 0.0000
153 F A 0.0000
154 M A 0.0000
155 L A 0.0000
156 Y A 0.0000
157 D A 0.0000
158 A A 0.0000
159 L A 0.0000
160 D A 0.0000
161 V A 0.0000
162 V A 0.0000
163 L A 0.4056
164 Y A 0.5020
165 M A 0.0000
166 D A -0.0097
167 P A -0.0146
168 M A -0.5478
169 C A -0.4489
170 L A 0.0000
171 D A -1.6640
172 A A -1.0025
173 F A 0.0000
174 P A -0.4244
175 K A -0.8936
176 L A 0.0000
177 V A 0.0899
178 C A -0.0207
179 F A 0.0000
180 K A 0.0000
181 K A -1.7314
182 R A -1.2554
183 I A 0.0000
184 E A -1.4131
185 A A -1.2069
186 I A -0.8422
187 P A -0.9686
188 Q A -1.3680
189 I A 0.0000
190 D A -1.9665
191 K A -2.6332
192 Y A 0.0000
193 L A -1.6846
194 K A -2.6390
195 S A -1.9062
196 S A -1.4614
197 K A -1.9293
198 Y A -1.0519
199 I A 0.0000
200 A A -0.2214
201 W A -0.5846
202 P A 0.0000
203 L A 0.0000
204 Q A 0.0000
205 G A 0.0000
206 W A -1.4357
207 Q A -1.1705
208 A A 0.0000
209 T A -0.9180
210 F A 0.0000
211 G A 0.0000
212 G A -0.9316
213 G A -1.7811
214 D A -2.6831
215 H A -2.2514
216 P A -1.2860
217 P A -1.6533
218 K A -2.2448
219 S A -1.7143
220 D A -2.4129
221 L A -0.5081
222 V A -0.2093
223 P A -0.7878
224 R A -2.0917
225 G A -1.6488
226 S A -1.3138
227 P A -1.1071
228 G A -0.9641
229 G A -0.6635
230 S A -0.1926
231 M A 0.3365
232 G A -0.7720
233 P A -2.0774
234 K A -3.2468
235 R A -3.4417
236 R A -3.0651
237 Q A -2.5485
238 L A 0.0000
239 T A 0.0000
240 F A 0.0000
241 R A -0.9055
242 E A -0.9358
243 K A -1.0469
244 S A 0.0000
245 R A -1.3547
246 I A 0.0000
247 I A 0.0000
248 Q A -2.5061
249 E A -2.2651
250 V A 0.0000
251 E A -3.4887
252 E A -3.4243
253 N A -2.8667
254 P A -2.6227
255 D A -2.8415
256 L A -2.5892
257 R A -3.2625
258 K A -3.4037
259 G A -2.8376
260 E A -3.6144
261 I A 0.0000
262 A A 0.0000
263 R A -3.8260
264 R A -3.4663
265 F A -2.0864
266 N A -2.6875
267 I A 0.0000
268 P A -1.2412
269 P A -1.4466
270 S A -0.5009
271 T A -0.6120
272 L A 0.0000
273 S A -1.0795
274 T A -0.9351
275 I A 0.0000
276 L A -1.2072
277 K A -2.2385
278 N A -1.8960
279 K A -2.0418
280 R A -2.3172
281 A A -1.5618
282 I A 0.0000
283 L A -1.5411
284 A A -1.5524
285 S A 0.0000
286 E A -2.0125
287 R A -2.6931
288 K A -2.5288
289 Y A -1.4802
290 G A -1.1209
291 V A -0.5448
292 A A -0.9336
293 S A 0.0000
294 T A -0.1602
295 C A -0.5049
296 R A -1.3930
297 K A -2.0528
298 T A -1.7096
299 N A -1.9747
300 K A -1.8970
301 L A -0.1860
302 S A 0.0000
303 P A -0.5794
304 Y A -0.7483
305 D A -1.6703
306 K A -1.9046
307 L A 0.0000
308 E A 0.0000
309 G A -0.6085
310 L A 0.2265
311 L A 0.0000
312 I A 0.1527
313 A A -0.0822
314 W A -0.4183
315 F A -0.7665
316 Q A -1.9287
317 Q A -1.9285
318 I A 0.0000
319 R A -2.1295
320 A A -1.3741
321 A A -1.0481
322 G A -1.3826
323 L A 0.0000
324 P A -0.5460
325 V A 0.0000
326 K A 0.0837
327 G A 0.1357
328 I A 0.9921
329 I A -0.1456
330 L A 0.0000
331 K A -0.9965
332 E A -1.8821
333 K A -1.6233
334 A A 0.0000
335 L A -2.1021
336 R A -3.3523
337 I A 0.0000
338 A A 0.0000
339 E A -3.8361
340 E A -3.0489
341 L A -1.9736
342 G A -2.3188
343 M A -2.2790
344 D A -2.9814
345 D A -2.8538
346 F A 0.0000
347 T A -1.0814
348 A A 0.0000
349 S A -1.1716
350 N A -1.7147
351 G A -1.5929
352 W A 0.0000
353 L A 0.0000
354 D A -2.7364
355 R A -3.3631
356 F A 0.0000
357 R A -2.1494
358 R A -3.4339
359 R A -2.1757
360 H A -1.2939
361 G A -1.6264
362 V A 0.0000
363 V A -0.0377
364 S A 0.0385
365 C A 0.5575
366 S A 0.1957
367 G A 0.2603
368 V A 1.1012
369 A A -0.2769
370 R A -1.7500
371 G A -1.3752
372 S A -1.4522
373 G A -1.8389
374 E A -2.7015
375 G A -2.0267
376 D A -1.9547
377 V A -0.3358
378 D A -1.9800
379 S A -2.2268
380 D A -3.6452
381 E A -4.5424
382 E A -4.6894
383 E A -4.9989
384 E A -4.8557
385 E A -4.9616
386 D A -4.6413
387 E A -4.3061
388 E A -3.5206
389 S A -2.0849
390 S A -1.7153
391 S A -1.4074
392 E A -2.0754
393 G A -1.1418
394 L A -0.3415
395 E A -2.1362
396 A A -1.8411
397 E A -2.8348
398 D A -2.3538
399 W A -1.2461
400 A A -0.9583
401 Q A -1.4628
402 G A -0.8533
403 V A 0.0033
404 V A 0.2635
405 E A -1.4845
406 A A -0.5848
407 G A -0.4199
408 G A -0.2611
409 S A 0.2596
410 F A 1.5019
411 G A 0.3876
412 A A 0.7674
413 Y A 1.1293
414 G A -0.3718
415 A A -1.1749
416 Q A -2.4805
417 E A -3.4695
418 E A -3.2497
419 A A -1.9429
420 Q A -1.6337
421 C A -0.0202
422 P A 0.0378
423 T A 0.5660
424 L A 1.7585
425 H A 0.8576
426 F A 2.0539
427 L A 1.3389
428 E A -1.1824
429 G A -1.3522
430 G A -2.2215
431 E A -3.2482
432 D A -3.2569
433 S A -2.5296
434 D A -2.7684
435 S A -2.1982
436 D A -2.7911
437 S A -2.4078
438 E A -3.5865
439 E A -4.1293
440 E A -4.5544
441 D A -4.4941
442 D A -4.3431
443 E A -4.3468
444 E A -4.4403
445 E A -4.4468
446 D A -4.4153
447 D A -4.4086
448 E A -4.5839
449 D A -4.5734
450 E A -4.6355
451 D A -4.8561
452 D A -4.8673
453 D A -5.0177
454 D A -4.9939
455 D A -5.1420
456 E A -4.9368
457 E A -4.7338
458 D A -4.5160
459 G A -3.3619
460 D A -3.1692
461 E A -2.0664
462 V A 0.6084
463 P A 0.5896
464 V A 1.6402
465 P A 0.6591
466 S A -0.0026
467 F A 0.6275
468 G A -0.4802
469 E A -0.6943
470 A A 0.3613
471 M A 0.5992
472 A A 0.6873
473 Y A 1.4730
474 F A 0.0000
475 A A 0.9015
476 M A 1.8861
477 V A 2.1223
478 K A 0.5847
479 R A -0.1234
480 Y A 1.6119
481 L A 1.5423
482 T A 0.7613
483 S A 0.9166
484 F A 1.9038
485 P A 0.7907
486 I A 0.3808
487 D A -1.0108
488 D A -1.4665
489 R A -2.1930
490 V A -0.9247
491 Q A 0.0000
492 S A -1.3228
493 H A -1.5163
494 I A 0.0000
495 L A 0.0000
496 H A -1.4333
497 L A -0.7672
498 E A -0.9077
499 H A -1.2126
500 D A -1.8562
501 L A -0.4274
502 V A -0.7335
503 H A -1.9029
504 V A -0.9445
505 T A -1.6822
506 R A -3.5487
507 K A -3.5734
508 N A -3.2898
509 H A -3.3002
510 A A -2.6809
511 R A -3.5489
512 Q A -2.9924
513 A A -1.7908
514 G A -1.1452
515 V A 0.0629
516 R A -1.6433
517 G A -0.5984
518 L A 0.5361
519 G A -0.8006
520 H A -1.8458
521 Q A -1.7978
522 S A -1.4481
523 G A -1.2684
524 G A -1.2395
525 S A -1.2649
526 H A -1.8890
527 H A -2.2742
528 H A -2.4192
529 H A -2.3937
530 H A -2.2383
531 H A -1.7884
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.8952 4.663 View CSV PDB
4.5 -1.0084 4.643 View CSV PDB
5.0 -1.1551 4.6225 View CSV PDB
5.5 -1.3089 4.6018 View CSV PDB
6.0 -1.4431 4.5812 View CSV PDB
6.5 -1.5399 4.5607 View CSV PDB
7.0 -1.5976 4.5406 View CSV PDB
7.5 -1.6286 4.5221 View CSV PDB
8.0 -1.6452 4.5069 View CSV PDB
8.5 -1.6509 4.4969 View CSV PDB
9.0 -1.6423 4.4916 View CSV PDB