Chain sequence(s) |
A: MARSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKPEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNNTSSCCCFGFGGK
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:02) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.5845 | |
2 | A | A | -0.5386 | |
3 | R | A | -1.7409 | |
4 | S | A | -1.2428 | |
5 | N | A | -1.2548 | |
6 | V | A | 0.6394 | |
7 | P | A | -0.1420 | |
8 | K | A | -0.9157 | |
9 | F | A | 0.9273 | |
10 | G | A | -0.5493 | |
11 | N | A | -1.7242 | |
12 | W | A | -0.8316 | |
13 | E | A | -2.6777 | |
14 | A | A | -2.3891 | |
15 | E | A | -3.2907 | |
16 | E | A | -3.2816 | |
17 | N | A | -2.2582 | |
18 | V | A | -0.5098 | |
19 | P | A | 0.4956 | |
20 | Y | A | 1.7528 | |
21 | T | A | 0.9426 | |
22 | A | A | 0.4398 | |
23 | Y | A | 1.0174 | |
24 | F | A | 0.6238 | |
25 | D | A | -1.5225 | |
26 | K | A | -2.6227 | |
27 | A | A | -2.0941 | |
28 | R | A | -3.1353 | |
29 | K | A | -3.5975 | |
30 | T | A | -2.6192 | |
31 | R | A | -2.7802 | |
32 | A | A | -1.6689 | |
33 | P | A | -1.5304 | |
34 | G | A | -1.0176 | |
35 | S | A | -1.0343 | |
36 | K | A | -0.8344 | |
37 | I | A | 0.9264 | |
38 | M | A | 0.6408 | |
39 | N | A | -0.8234 | |
40 | P | A | -1.1835 | |
41 | N | A | -2.0315 | |
42 | D | A | -1.9684 | |
43 | P | A | -2.4453 | |
44 | E | A | -2.8433 | |
45 | Y | A | -1.9483 | |
46 | N | A | -2.9115 | |
47 | S | A | -2.7115 | |
48 | D | A | -3.2042 | |
49 | S | A | -2.4871 | |
50 | Q | A | -2.4973 | |
51 | S | A | -2.1464 | |
52 | Q | A | -2.1710 | |
53 | A | A | -1.1502 | |
54 | P | A | -0.9847 | |
55 | P | A | -1.1496 | |
56 | H | A | -1.3987 | |
57 | P | A | -1.0463 | |
58 | P | A | -1.0549 | |
59 | S | A | -1.1451 | |
60 | S | A | -1.3405 | |
61 | R | A | -2.4565 | |
62 | T | A | -2.1914 | |
63 | K | A | -2.6673 | |
64 | P | A | -2.2882 | |
65 | E | A | -2.5551 | |
66 | Q | A | -1.5543 | |
67 | V | A | -0.1862 | |
68 | D | A | -0.8356 | |
69 | T | A | -0.1569 | |
70 | V | A | 0.0610 | |
71 | R | A | -2.2755 | |
72 | R | A | -3.0126 | |
73 | S | A | -2.9121 | |
74 | R | A | -3.5396 | |
75 | E | A | -3.0571 | |
76 | H | A | -2.2769 | |
77 | M | A | -1.0557 | |
78 | R | A | -2.0791 | |
79 | S | A | -2.1583 | |
80 | R | A | -3.6327 | |
81 | E | A | -3.9099 | |
82 | E | A | -3.4800 | |
83 | S | A | -2.2592 | |
84 | E | A | -2.4847 | |
85 | L | A | -0.5247 | |
86 | K | A | -1.5407 | |
87 | Q | A | -1.0676 | |
88 | F | A | 0.4693 | |
89 | G | A | -0.7618 | |
90 | D | A | -1.7109 | |
91 | A | A | -1.2921 | |
92 | G | A | -1.1005 | |
93 | G | A | -0.8315 | |
94 | S | A | -0.9337 | |
95 | S | A | -1.4725 | |
96 | N | A | -2.2894 | |
97 | E | A | -2.4444 | |
98 | A | A | -1.5885 | |
99 | A | A | -1.7387 | |
100 | N | A | -2.4853 | |
101 | K | A | -3.4694 | |
102 | R | A | -3.6805 | |
103 | Q | A | -3.1340 | |
104 | G | A | -2.3943 | |
105 | R | A | -2.3838 | |
106 | A | A | -1.4925 | |
107 | S | A | -1.4177 | |
108 | Q | A | -2.1747 | |
109 | N | A | -2.4490 | |
110 | N | A | -1.9768 | |
111 | S | A | -0.9196 | |
112 | Y | A | -0.4601 | |
113 | D | A | -2.0586 | |
114 | N | A | -2.7707 | |
115 | K | A | -2.8580 | |
116 | S | A | -1.2362 | |
117 | P | A | -0.2272 | |
118 | L | A | 0.5011 | |
119 | H | A | -1.4310 | |
120 | K | A | -2.4818 | |
121 | N | A | -2.1267 | |
122 | S | A | -1.0560 | |
123 | Y | A | -0.0271 | |
124 | D | A | -1.4908 | |
125 | G | A | -1.3994 | |
126 | T | A | -1.3424 | |
127 | G | A | -1.9121 | |
128 | K | A | -2.5042 | |
129 | S | A | -2.3789 | |
130 | R | A | -2.9506 | |
131 | P | A | -2.0853 | |
132 | K | A | -2.6245 | |
133 | P | A | -1.5202 | |
134 | T | A | -0.9891 | |
135 | N | A | -1.2635 | |
136 | L | A | -0.1289 | |
137 | R | A | -1.6069 | |
138 | A | A | -1.9271 | |
139 | D | A | -3.1020 | |
140 | E | A | -3.1138 | |
141 | S | A | -2.4158 | |
142 | P | A | -1.9307 | |
143 | E | A | -2.6982 | |
144 | K | A | -1.5909 | |
145 | V | A | 1.1585 | |
146 | T | A | 1.1683 | |
147 | V | A | 2.5985 | |
148 | V | A | 2.6181 | |
149 | P | A | 0.6833 | |
150 | K | A | -0.6880 | |
151 | F | A | 0.5412 | |
152 | G | A | -1.0300 | |
153 | D | A | -2.0181 | |
154 | W | A | -1.2200 | |
155 | D | A | -2.8771 | |
156 | E | A | -3.3307 | |
157 | N | A | -2.8041 | |
158 | N | A | -2.1964 | |
159 | P | A | -1.6761 | |
160 | S | A | -1.3883 | |
161 | S | A | -1.4345 | |
162 | A | A | -0.7581 | |
163 | D | A | -1.4867 | |
164 | G | A | -0.5735 | |
165 | Y | A | 1.1460 | |
166 | T | A | 0.3282 | |
167 | H | A | -0.1792 | |
168 | I | A | 1.6587 | |
169 | F | A | 1.4294 | |
170 | N | A | -1.2410 | |
171 | K | A | -2.4569 | |
172 | V | A | -1.6019 | |
173 | R | A | -3.5919 | |
174 | E | A | -4.3279 | |
175 | E | A | -4.2708 | |
176 | R | A | -4.2673 | |
177 | S | A | -3.0875 | |
178 | S | A | -2.5908 | |
179 | G | A | -1.6712 | |
180 | A | A | -0.9712 | |
181 | N | A | -0.8088 | |
182 | V | A | 0.5988 | |
183 | S | A | 0.0239 | |
184 | G | A | -0.6452 | |
185 | S | A | -0.8993 | |
186 | S | A | -1.4245 | |
187 | R | A | -2.1784 | |
188 | T | A | -1.3484 | |
189 | P | A | -1.2966 | |
190 | T | A | -1.3711 | |
191 | H | A | -1.7752 | |
192 | Q | A | -2.1706 | |
193 | S | A | -1.8440 | |
194 | S | A | -2.0792 | |
195 | R | A | -3.0206 | |
196 | N | A | -2.8917 | |
197 | P | A | -2.2857 | |
198 | N | A | -2.6196 | |
199 | N | A | -2.2368 | |
200 | T | A | -1.1774 | |
201 | S | A | -0.4727 | |
202 | S | A | 0.0719 | |
203 | C | A | 1.0971 | |
204 | C | A | 1.7665 | |
205 | C | A | 2.3176 | |
206 | F | A | 2.6396 | |
207 | G | A | 1.5500 | |
208 | F | A | 1.7087 | |
209 | G | A | 0.0384 | |
210 | G | A | -1.0591 | |
211 | K | A | -1.8237 |