Project name: d438fabd3588d7d

Chain sequence(s)	A: LALNLILMAASGAVCEVKDV
Selected Chain(s)	A
Distance of aggregation	10 Å
FoldX usage	Yes
pH calculations	Yes
alphaCutter usage	No
Dynamic mode	No
Automated mutations	No

Simulation log

[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:02)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:12)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/d438fabd3588d7d/tmp/folded.pdb                (00:00:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:54)

• Minimal score value: -2.4963
• Maximal score value: 3.5656
• Average score: 1.0039
• Total score value: 19.0738

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index	residue name	chain	Aggrescan4D score	mutation
1	L	A	2.0007
2	A	A	1.7044
3	L	A	2.7215
4	N	A	1.5016
5	L	A	2.1963
6	I	A	3.5656
7	L	A	2.6650
8	M	A	1.9168
9	A	A	1.7356
10	A	A	1.1499
11	S	A	0.6602
12	G	A	0.2128
13	A	A	1.2596
14	V	A	1.6580
15	C	A	0.6979
16	E	A	-1.3341
17	V	A	-0.3557
18	K	A	-2.3860
19	D	A	-2.4963

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH	Average A4D Score	Max A4D Score
4.0	1.8709	5.308
4.5	1.7983	5.308
5.0	1.7068	5.308
5.5	1.6152	5.308
6.0	1.546	5.308
6.5	1.5128	5.308
7.0	1.5096	5.308
7.5	1.5218	5.308
8.0	1.5402	5.308
8.5	1.5612	5.308
9.0	1.5847	5.308