| Chain sequence(s) |
A: APTSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIISTLT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | Used: no changes made |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:12)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:12)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:12)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:12)
[INFO] PDB: Running AlphaCutter (00:00:12)
[INFO] PDB: AlphaCutter did not cut any residues. The original structure will be used
for analysis. (00:00:47)
[INFO] FoldX: Starting FoldX energy minimization (00:00:48)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:05:56)
[INFO] Main: Simulation completed successfully. (00:05:57)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | A | A | 0.0122 | |
| 2 | P | A | -0.2572 | |
| 3 | T | A | -0.1554 | |
| 4 | S | A | -0.2638 | |
| 5 | S | A | -0.2733 | |
| 6 | S | A | -0.1659 | |
| 7 | T | A | -0.2690 | |
| 8 | K | A | -1.5661 | |
| 9 | K | A | -1.9279 | |
| 10 | T | A | -0.3588 | |
| 11 | Q | A | -0.1437 | |
| 12 | L | A | 0.4427 | |
| 13 | Q | A | -0.1346 | |
| 14 | L | A | 0.0000 | |
| 15 | E | A | -0.8438 | |
| 16 | H | A | -1.1098 | |
| 17 | L | A | 0.0000 | |
| 18 | L | A | 0.4462 | |
| 19 | L | A | 1.5397 | |
| 20 | D | A | 0.0658 | |
| 21 | L | A | 0.0000 | |
| 22 | Q | A | -0.3824 | |
| 23 | M | A | 0.4816 | |
| 24 | I | A | 0.0000 | |
| 25 | L | A | -0.0940 | |
| 26 | N | A | -1.2507 | |
| 27 | G | A | -0.2926 | |
| 28 | I | A | 0.0000 | |
| 29 | N | A | -1.5021 | |
| 30 | N | A | -1.5021 | |
| 31 | Y | A | 0.0000 | |
| 32 | K | A | -1.7573 | |
| 33 | N | A | -0.6699 | |
| 34 | P | A | -0.4973 | |
| 35 | K | A | -1.0540 | |
| 36 | L | A | 0.0137 | |
| 37 | T | A | -0.3611 | |
| 38 | R | A | -1.8567 | |
| 39 | M | A | 0.0000 | |
| 40 | L | A | 0.6492 | |
| 41 | T | A | 0.2022 | |
| 42 | F | A | 0.5217 | |
| 43 | K | A | -1.5438 | |
| 44 | F | A | 0.0000 | |
| 45 | Y | A | 0.8316 | |
| 46 | M | A | 0.0000 | |
| 47 | P | A | 0.0000 | |
| 48 | K | A | -1.7537 | |
| 49 | K | A | -1.9594 | |
| 50 | A | A | -0.3078 | |
| 51 | T | A | -0.3146 | |
| 52 | E | A | -1.3367 | |
| 53 | L | A | -0.1922 | |
| 54 | K | A | -1.0284 | |
| 55 | H | A | -0.3016 | |
| 56 | L | A | 0.0000 | |
| 57 | Q | A | -0.1646 | |
| 58 | C | A | 0.0000 | |
| 59 | L | A | 0.0000 | |
| 60 | E | A | -0.5573 | |
| 61 | E | A | -1.3597 | |
| 62 | E | A | -0.4316 | |
| 63 | L | A | 0.0000 | |
| 64 | K | A | -1.7090 | |
| 65 | P | A | -0.3532 | |
| 66 | L | A | 0.0000 | |
| 67 | E | A | -0.7296 | |
| 68 | E | A | -1.8923 | |
| 69 | V | A | 0.0000 | |
| 70 | L | A | 0.0000 | |
| 71 | N | A | -0.1632 | |
| 72 | L | A | 0.3283 | |
| 73 | A | A | 0.0000 | |
| 74 | Q | A | -0.3892 | |
| 75 | S | A | -0.4738 | |
| 76 | K | A | -1.9424 | |
| 77 | N | A | -1.5735 | |
| 78 | F | A | 0.0000 | |
| 79 | H | A | -0.9901 | |
| 80 | L | A | 0.0000 | |
| 81 | R | A | -1.3212 | |
| 82 | P | A | 0.0000 | |
| 83 | R | A | -2.1684 | |
| 84 | D | A | -2.0957 | |
| 85 | L | A | -0.1683 | |
| 86 | I | A | 0.0000 | |
| 87 | S | A | -0.3213 | |
| 88 | N | A | -0.8530 | |
| 89 | I | A | 0.0000 | |
| 90 | N | A | -0.0143 | |
| 91 | V | A | 1.7505 | |
| 92 | I | A | 0.5261 | |
| 93 | V | A | 0.0000 | |
| 94 | L | A | 0.6812 | |
| 95 | E | A | -1.6377 | |
| 96 | L | A | 0.0000 | |
| 97 | K | A | -0.3970 | |
| 98 | G | A | -0.2846 | |
| 99 | S | A | -0.5781 | |
| 100 | E | A | -1.8711 | |
| 101 | T | A | -0.4117 | |
| 102 | T | A | -0.0144 | |
| 103 | F | A | 0.5583 | |
| 104 | M | A | 1.1390 | |
| 105 | C | A | -0.0499 | |
| 106 | E | A | -1.7467 | |
| 107 | Y | A | -0.0198 | |
| 108 | A | A | -0.4412 | |
| 109 | D | A | -2.1160 | |
| 110 | E | A | -2.1468 | |
| 111 | T | A | -0.3555 | |
| 112 | A | A | 0.0000 | |
| 113 | T | A | -0.0318 | |
| 114 | I | A | 0.0000 | |
| 115 | V | A | 0.3823 | |
| 116 | E | A | -0.9185 | |
| 117 | F | A | 0.0000 | |
| 118 | L | A | 0.0000 | |
| 119 | N | A | -0.7928 | |
| 120 | R | A | -1.1074 | |
| 121 | W | A | 0.0000 | |
| 122 | I | A | 0.0000 | |
| 123 | T | A | -0.0652 | |
| 124 | F | A | 0.0000 | |
| 125 | C | A | 0.0000 | |
| 126 | Q | A | -0.9438 | |
| 127 | S | A | -0.2791 | |
| 128 | I | A | 0.0000 | |
| 129 | I | A | 0.2096 | |
| 130 | S | A | -0.1811 | |
| 131 | T | A | -0.0021 | |
| 132 | L | A | 0.5712 | |
| 133 | T | A | 0.0350 |