Project name: d9ac77b95c5d233

Status: done

Started: 2025-05-07 03:05:00
Chain sequence(s) A: MGSSMAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGKEDHHHHHH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:06:39)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/d9ac77b95c5d233/tmp/folded.pdb                (00:06:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:41)
Show buried residues

Minimal score value
-6.1091
Maximal score value
3.972
Average score
-1.2779
Total score value
-626.1633

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.7807
2 G A -0.1174
3 S A -0.1371
4 S A 0.0735
5 M A 0.7832
6 A A 0.2031
7 G A -0.6291
8 G A -1.1322
9 G A -1.2927
10 G A -1.3566
11 D A -1.5003
12 L A 0.1537
13 S A -0.7489
14 T A -1.1771
15 R A -2.3785
16 R A -2.6035
17 L A -0.9122
18 N A -1.6880
19 E A -1.3656
20 C A 0.5836
21 I A 1.7914
22 S A 1.1000
23 P A 0.9339
24 V A 1.3127
25 A A -0.1724
26 N A -1.5188
27 E A -2.1642
28 M A -0.8722
29 N A -1.4509
30 H A -0.9249
31 L A 0.5394
32 P A -0.3862
33 A A -0.8808
34 H A -1.7198
35 S A -1.8096
36 H A -2.7616
37 D A -2.6544
38 L A -1.4381
39 Q A -2.2132
40 R A -2.8469
41 M A -1.1955
42 F A -0.2129
43 T A -1.3551
44 E A -2.5631
45 D A -2.4319
46 Q A -2.1290
47 G A -1.6511
48 V A -0.5959
49 D A -1.9509
50 D A -1.9582
51 R A -1.4630
52 L A -0.6456
53 L A 0.0000
54 Y A -0.9372
55 D A -1.9973
56 I A 0.0000
57 V A 0.0000
58 F A -1.2238
59 K A -2.2913
60 H A -1.7600
61 F A 0.0000
62 K A -2.0682
63 R A -2.5765
64 N A -1.6102
65 K A 0.0000
66 V A -0.0630
67 E A -1.5089
68 I A 0.0000
69 S A 0.0000
70 N A -2.3035
71 A A 0.0000
72 I A 0.0000
73 K A -2.4054
74 K A -2.0102
75 T A -0.1928
76 F A 0.9673
77 P A 0.0000
78 F A 0.0000
79 L A 0.0000
80 E A -1.1779
81 G A -1.3751
82 L A 0.0000
83 R A -3.2638
84 D A -3.7791
85 R A -3.7980
86 D A -3.5392
87 L A -2.0227
88 I A 0.0000
89 T A -2.3836
90 N A -3.0840
91 K A -3.2684
92 M A -2.6489
93 F A 0.0000
94 E A -3.8938
95 D A -4.0265
96 S A 0.0000
97 Q A -2.8477
98 D A -3.6390
99 S A -2.3128
100 C A -1.9159
101 R A -2.6559
102 N A -1.7229
103 L A 0.4298
104 V A -0.0642
105 P A -0.8069
106 V A -1.3824
107 Q A -2.0052
108 R A -1.8951
109 V A 0.0000
110 V A 0.0000
111 Y A -0.8636
112 N A -1.4709
113 V A 0.0000
114 L A 0.0000
115 S A -1.6535
116 E A -2.5319
117 L A 0.0000
118 E A -2.0638
119 K A -2.4924
120 T A -1.1456
121 F A 0.0000
122 N A -0.9480
123 L A 0.0000
124 P A -1.3860
125 V A 0.0000
126 L A 0.0000
127 E A -2.0894
128 A A -1.5141
129 L A 0.0000
130 F A 0.0000
131 S A -1.4005
132 D A -1.9819
133 V A -0.5633
134 N A 0.0000
135 M A -1.3857
136 Q A -2.2264
137 E A -2.6026
138 Y A 0.0000
139 P A -1.6763
140 D A -2.5395
141 L A 0.0000
142 I A -0.6065
143 H A -1.4106
144 I A -1.1974
145 Y A 0.0000
146 K A -1.5837
147 G A -1.2868
148 F A 0.0000
149 E A -1.8793
150 N A -2.4598
151 V A -1.7685
152 I A 0.0000
153 H A -2.1603
154 D A -2.8081
155 K A -2.2677
156 L A 0.0000
157 P A -0.9825
158 L A -0.5464
159 Q A -2.1211
160 E A -3.6910
161 S A -3.4160
162 E A -4.9754
163 E A -5.9179
164 E A -6.0294
165 E A -6.1091
166 R A -5.7589
167 E A -5.5039
168 E A -5.0740
169 R A -4.3083
170 S A -2.4742
171 G A -1.4690
172 L A 0.1573
173 Q A -0.4049
174 L A 1.0856
175 S A 0.5286
176 L A 0.5330
177 E A -1.7260
178 Q A -1.8639
179 G A -1.7846
180 T A -1.6273
181 G A -1.9626
182 E A -2.7839
183 N A -1.9321
184 S A -0.6591
185 F A 0.6200
186 R A -0.7215
187 S A -0.0723
188 L A 1.2476
189 T A 1.1676
190 W A 1.2851
191 P A 0.1938
192 P A -0.3139
193 S A -0.6995
194 G A -0.7823
195 S A -0.7822
196 P A -0.8212
197 S A -0.9833
198 H A -1.2589
199 A A -0.7466
200 G A -0.7244
201 T A -0.3999
202 T A -0.3863
203 P A -0.8250
204 P A -1.5430
205 E A -2.7367
206 N A -2.1444
207 G A -0.7627
208 L A 0.5773
209 S A -0.6422
210 E A -2.1535
211 H A -1.8970
212 P A -1.2329
213 C A -0.5592
214 E A -1.9179
215 T A -1.8912
216 E A -2.4025
217 Q A -1.3772
218 I A 0.3444
219 N A -0.9391
220 A A -1.6405
221 K A -3.1845
222 R A -3.9463
223 K A -3.9525
224 D A -3.0857
225 T A -1.3744
226 T A -0.9434
227 S A -1.4640
228 D A -3.1018
229 K A -3.9777
230 D A -4.0134
231 D A -2.8167
232 S A -0.8442
233 L A 0.7286
234 G A -0.1630
235 S A -1.0019
236 Q A -2.0869
237 Q A -2.2023
238 T A -1.9774
239 N A -2.8107
240 E A -2.9512
241 Q A -1.9690
242 C A -0.5074
243 A A -0.8151
244 Q A -1.8563
245 K A -2.6290
246 A A -1.9872
247 E A -2.2886
248 P A -1.6417
249 T A -1.5030
250 E A -1.8661
251 S A -1.1692
252 C A -0.9485
253 E A -1.6483
254 Q A -0.9749
255 I A 1.3856
256 A A 1.2693
257 V A 1.9872
258 Q A 0.2873
259 V A 0.6046
260 N A -1.3464
261 N A -2.2793
262 G A -2.2865
263 D A -2.4130
264 A A -1.5641
265 G A -2.0716
266 R A -2.7613
267 E A -2.3806
268 M A -0.2077
269 P A 0.1777
270 C A 1.0585
271 P A 0.8680
272 L A 1.6086
273 P A 0.6113
274 C A -0.2945
275 D A -2.7332
276 E A -3.4902
277 E A -3.2371
278 S A -2.0234
279 P A -1.6600
280 E A -2.2439
281 A A -1.4591
282 E A -1.8141
283 L A -0.2934
284 H A -1.5814
285 N A -1.9888
286 H A -1.7417
287 G A -0.4745
288 I A 1.2243
289 Q A 0.1193
290 I A 1.3129
291 N A -0.3269
292 S A 0.1047
293 C A 0.6854
294 S A 0.4513
295 V A 1.6074
296 R A 0.0863
297 L A 1.7726
298 V A 1.7020
299 D A -0.4741
300 I A 0.3103
301 K A -2.5275
302 K A -3.5858
303 E A -3.4743
304 K A -2.8854
305 P A -0.9888
306 F A 0.7051
307 S A -0.3825
308 N A -1.4162
309 S A -1.1753
310 K A -1.6419
311 V A 0.1189
312 E A -1.1281
313 C A -0.3959
314 Q A -1.4013
315 A A -0.9928
316 Q A -1.7964
317 A A -1.4609
318 R A -2.3493
319 T A -1.6867
320 H A -2.3446
321 H A -2.3749
322 N A -2.5735
323 Q A -2.3689
324 A A -1.3202
325 S A -0.7314
326 D A -0.2684
327 I A 2.8111
328 I A 3.8390
329 V A 3.9720
330 I A 3.2693
331 S A 0.6913
332 S A -0.9671
333 E A -2.8863
334 D A -3.3092
335 S A -2.5976
336 E A -2.8209
337 G A -1.5328
338 S A -1.3025
339 T A -0.8907
340 D A -1.3589
341 V A -0.3215
342 D A -2.2102
343 E A -2.1622
344 P A -1.2728
345 L A 0.5543
346 E A 0.1643
347 V A 2.5857
348 F A 3.3749
349 I A 3.2724
350 S A 1.1548
351 A A -0.2088
352 P A -1.2165
353 R A -2.4570
354 S A -1.9129
355 E A -1.8268
356 P A -0.0232
357 V A 1.8772
358 I A 1.7095
359 N A -0.9551
360 N A -2.5830
361 D A -3.3730
362 N A -2.2062
363 P A -0.9138
364 L A 0.1847
365 E A -1.5164
366 S A -1.8762
367 N A -3.3020
368 D A -3.9541
369 E A -4.3283
370 K A -4.3040
371 E A -4.0226
372 G A -3.0505
373 Q A -2.9479
374 E A -2.6339
375 A A -1.0769
376 T A -0.6608
377 C A -0.1670
378 S A -1.0196
379 R A -1.9399
380 P A -0.8561
381 Q A -0.3815
382 I A 1.6338
383 V A 1.7094
384 P A -0.1782
385 E A -1.3223
386 P A -0.9923
387 M A -1.2835
388 D A -1.6685
389 F A -1.7440
390 R A -2.6063
391 K A -2.6396
392 L A 0.0000
393 S A -1.9664
394 T A -1.7839
395 F A 0.0000
396 R A -2.2384
397 E A -2.9216
398 S A -2.3412
399 F A 0.0000
400 K A -2.6927
401 K A -3.0046
402 R A -2.7044
403 V A -1.7504
404 I A -1.1189
405 G A -2.3411
406 Q A -2.5679
407 D A -2.5346
408 H A -2.4754
409 D A -2.4425
410 F A -0.6371
411 S A -1.3374
412 E A -2.0835
413 S A -1.7759
414 S A -2.5566
415 E A -3.6067
416 E A -3.6966
417 E A -3.2650
418 A A -1.8776
419 P A -1.2958
420 A A -1.1671
421 E A -1.8686
422 A A -1.0516
423 S A -0.8086
424 S A -0.5156
425 G A -0.2483
426 A A 0.1470
427 L A 0.5077
428 R A -1.5155
429 S A -1.8669
430 K A -2.7866
431 H A -2.5195
432 G A -2.5712
433 E A -3.1053
434 K A -2.7519
435 A A -1.0626
436 P A -0.1082
437 M A 0.8607
438 T A -0.1193
439 S A -0.9553
440 R A -2.1067
441 S A -1.2690
442 T A -0.5958
443 S A -0.4556
444 T A 0.1010
445 W A 0.6470
446 R A -0.4834
447 I A 0.9096
448 P A -0.4258
449 S A -1.6401
450 R A -3.2702
451 K A -3.8142
452 R A -3.5832
453 R A -2.5057
454 F A 0.1887
455 S A -0.2842
456 S A -0.3468
457 S A -0.6136
458 D A -1.2036
459 F A 0.4931
460 S A -0.2381
461 D A -0.9234
462 L A 0.1798
463 S A -0.6376
464 N A -1.6858
465 G A -2.4640
466 E A -2.8856
467 E A -2.2992
468 L A -0.7120
469 Q A -1.7351
470 E A -1.9941
471 T A -0.9998
472 C A 0.1038
473 S A -0.0479
474 S A -0.0491
475 S A -0.2094
476 L A -0.0719
477 R A -2.2116
478 R A -2.6922
479 G A -1.8777
480 S A -1.7186
481 G A -2.1456
482 K A -3.2912
483 E A -3.8714
484 D A -3.7785
485 H A -2.9779
486 H A -2.5641
487 H A -2.3850
488 H A -2.3961
489 H A -2.2276
490 H A -1.7514
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.8204 5.978 View CSV PDB
4.5 -0.9571 5.9144 View CSV PDB
5.0 -1.1298 5.8283 View CSV PDB
5.5 -1.3081 5.7343 View CSV PDB
6.0 -1.4623 5.6467 View CSV PDB
6.5 -1.5726 5.5804 View CSV PDB
7.0 -1.6374 5.5427 View CSV PDB
7.5 -1.6706 5.5267 View CSV PDB
8.0 -1.6865 5.521 View CSV PDB
8.5 -1.6891 5.5192 View CSV PDB
9.0 -1.675 5.5186 View CSV PDB