Chain sequence(s) |
A: MGSSMAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGKEDHHHHHH
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] PDB-Info: The input structure is partially or entirely disordered. Average score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:02) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:06:39) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/d9ac77b95c5d233/tmp/folded.pdb (00:06:39) [INFO] Main: Simulation completed successfully. (00:08:41) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.7807 | |
2 | G | A | -0.1174 | |
3 | S | A | -0.1371 | |
4 | S | A | 0.0735 | |
5 | M | A | 0.7832 | |
6 | A | A | 0.2031 | |
7 | G | A | -0.6291 | |
8 | G | A | -1.1322 | |
9 | G | A | -1.2927 | |
10 | G | A | -1.3566 | |
11 | D | A | -1.5003 | |
12 | L | A | 0.1537 | |
13 | S | A | -0.7489 | |
14 | T | A | -1.1771 | |
15 | R | A | -2.3785 | |
16 | R | A | -2.6035 | |
17 | L | A | -0.9122 | |
18 | N | A | -1.6880 | |
19 | E | A | -1.3656 | |
20 | C | A | 0.5836 | |
21 | I | A | 1.7914 | |
22 | S | A | 1.1000 | |
23 | P | A | 0.9339 | |
24 | V | A | 1.3127 | |
25 | A | A | -0.1724 | |
26 | N | A | -1.5188 | |
27 | E | A | -2.1642 | |
28 | M | A | -0.8722 | |
29 | N | A | -1.4509 | |
30 | H | A | -0.9249 | |
31 | L | A | 0.5394 | |
32 | P | A | -0.3862 | |
33 | A | A | -0.8808 | |
34 | H | A | -1.7198 | |
35 | S | A | -1.8096 | |
36 | H | A | -2.7616 | |
37 | D | A | -2.6544 | |
38 | L | A | -1.4381 | |
39 | Q | A | -2.2132 | |
40 | R | A | -2.8469 | |
41 | M | A | -1.1955 | |
42 | F | A | -0.2129 | |
43 | T | A | -1.3551 | |
44 | E | A | -2.5631 | |
45 | D | A | -2.4319 | |
46 | Q | A | -2.1290 | |
47 | G | A | -1.6511 | |
48 | V | A | -0.5959 | |
49 | D | A | -1.9509 | |
50 | D | A | -1.9582 | |
51 | R | A | -1.4630 | |
52 | L | A | -0.6456 | |
53 | L | A | 0.0000 | |
54 | Y | A | -0.9372 | |
55 | D | A | -1.9973 | |
56 | I | A | 0.0000 | |
57 | V | A | 0.0000 | |
58 | F | A | -1.2238 | |
59 | K | A | -2.2913 | |
60 | H | A | -1.7600 | |
61 | F | A | 0.0000 | |
62 | K | A | -2.0682 | |
63 | R | A | -2.5765 | |
64 | N | A | -1.6102 | |
65 | K | A | 0.0000 | |
66 | V | A | -0.0630 | |
67 | E | A | -1.5089 | |
68 | I | A | 0.0000 | |
69 | S | A | 0.0000 | |
70 | N | A | -2.3035 | |
71 | A | A | 0.0000 | |
72 | I | A | 0.0000 | |
73 | K | A | -2.4054 | |
74 | K | A | -2.0102 | |
75 | T | A | -0.1928 | |
76 | F | A | 0.9673 | |
77 | P | A | 0.0000 | |
78 | F | A | 0.0000 | |
79 | L | A | 0.0000 | |
80 | E | A | -1.1779 | |
81 | G | A | -1.3751 | |
82 | L | A | 0.0000 | |
83 | R | A | -3.2638 | |
84 | D | A | -3.7791 | |
85 | R | A | -3.7980 | |
86 | D | A | -3.5392 | |
87 | L | A | -2.0227 | |
88 | I | A | 0.0000 | |
89 | T | A | -2.3836 | |
90 | N | A | -3.0840 | |
91 | K | A | -3.2684 | |
92 | M | A | -2.6489 | |
93 | F | A | 0.0000 | |
94 | E | A | -3.8938 | |
95 | D | A | -4.0265 | |
96 | S | A | 0.0000 | |
97 | Q | A | -2.8477 | |
98 | D | A | -3.6390 | |
99 | S | A | -2.3128 | |
100 | C | A | -1.9159 | |
101 | R | A | -2.6559 | |
102 | N | A | -1.7229 | |
103 | L | A | 0.4298 | |
104 | V | A | -0.0642 | |
105 | P | A | -0.8069 | |
106 | V | A | -1.3824 | |
107 | Q | A | -2.0052 | |
108 | R | A | -1.8951 | |
109 | V | A | 0.0000 | |
110 | V | A | 0.0000 | |
111 | Y | A | -0.8636 | |
112 | N | A | -1.4709 | |
113 | V | A | 0.0000 | |
114 | L | A | 0.0000 | |
115 | S | A | -1.6535 | |
116 | E | A | -2.5319 | |
117 | L | A | 0.0000 | |
118 | E | A | -2.0638 | |
119 | K | A | -2.4924 | |
120 | T | A | -1.1456 | |
121 | F | A | 0.0000 | |
122 | N | A | -0.9480 | |
123 | L | A | 0.0000 | |
124 | P | A | -1.3860 | |
125 | V | A | 0.0000 | |
126 | L | A | 0.0000 | |
127 | E | A | -2.0894 | |
128 | A | A | -1.5141 | |
129 | L | A | 0.0000 | |
130 | F | A | 0.0000 | |
131 | S | A | -1.4005 | |
132 | D | A | -1.9819 | |
133 | V | A | -0.5633 | |
134 | N | A | 0.0000 | |
135 | M | A | -1.3857 | |
136 | Q | A | -2.2264 | |
137 | E | A | -2.6026 | |
138 | Y | A | 0.0000 | |
139 | P | A | -1.6763 | |
140 | D | A | -2.5395 | |
141 | L | A | 0.0000 | |
142 | I | A | -0.6065 | |
143 | H | A | -1.4106 | |
144 | I | A | -1.1974 | |
145 | Y | A | 0.0000 | |
146 | K | A | -1.5837 | |
147 | G | A | -1.2868 | |
148 | F | A | 0.0000 | |
149 | E | A | -1.8793 | |
150 | N | A | -2.4598 | |
151 | V | A | -1.7685 | |
152 | I | A | 0.0000 | |
153 | H | A | -2.1603 | |
154 | D | A | -2.8081 | |
155 | K | A | -2.2677 | |
156 | L | A | 0.0000 | |
157 | P | A | -0.9825 | |
158 | L | A | -0.5464 | |
159 | Q | A | -2.1211 | |
160 | E | A | -3.6910 | |
161 | S | A | -3.4160 | |
162 | E | A | -4.9754 | |
163 | E | A | -5.9179 | |
164 | E | A | -6.0294 | |
165 | E | A | -6.1091 | |
166 | R | A | -5.7589 | |
167 | E | A | -5.5039 | |
168 | E | A | -5.0740 | |
169 | R | A | -4.3083 | |
170 | S | A | -2.4742 | |
171 | G | A | -1.4690 | |
172 | L | A | 0.1573 | |
173 | Q | A | -0.4049 | |
174 | L | A | 1.0856 | |
175 | S | A | 0.5286 | |
176 | L | A | 0.5330 | |
177 | E | A | -1.7260 | |
178 | Q | A | -1.8639 | |
179 | G | A | -1.7846 | |
180 | T | A | -1.6273 | |
181 | G | A | -1.9626 | |
182 | E | A | -2.7839 | |
183 | N | A | -1.9321 | |
184 | S | A | -0.6591 | |
185 | F | A | 0.6200 | |
186 | R | A | -0.7215 | |
187 | S | A | -0.0723 | |
188 | L | A | 1.2476 | |
189 | T | A | 1.1676 | |
190 | W | A | 1.2851 | |
191 | P | A | 0.1938 | |
192 | P | A | -0.3139 | |
193 | S | A | -0.6995 | |
194 | G | A | -0.7823 | |
195 | S | A | -0.7822 | |
196 | P | A | -0.8212 | |
197 | S | A | -0.9833 | |
198 | H | A | -1.2589 | |
199 | A | A | -0.7466 | |
200 | G | A | -0.7244 | |
201 | T | A | -0.3999 | |
202 | T | A | -0.3863 | |
203 | P | A | -0.8250 | |
204 | P | A | -1.5430 | |
205 | E | A | -2.7367 | |
206 | N | A | -2.1444 | |
207 | G | A | -0.7627 | |
208 | L | A | 0.5773 | |
209 | S | A | -0.6422 | |
210 | E | A | -2.1535 | |
211 | H | A | -1.8970 | |
212 | P | A | -1.2329 | |
213 | C | A | -0.5592 | |
214 | E | A | -1.9179 | |
215 | T | A | -1.8912 | |
216 | E | A | -2.4025 | |
217 | Q | A | -1.3772 | |
218 | I | A | 0.3444 | |
219 | N | A | -0.9391 | |
220 | A | A | -1.6405 | |
221 | K | A | -3.1845 | |
222 | R | A | -3.9463 | |
223 | K | A | -3.9525 | |
224 | D | A | -3.0857 | |
225 | T | A | -1.3744 | |
226 | T | A | -0.9434 | |
227 | S | A | -1.4640 | |
228 | D | A | -3.1018 | |
229 | K | A | -3.9777 | |
230 | D | A | -4.0134 | |
231 | D | A | -2.8167 | |
232 | S | A | -0.8442 | |
233 | L | A | 0.7286 | |
234 | G | A | -0.1630 | |
235 | S | A | -1.0019 | |
236 | Q | A | -2.0869 | |
237 | Q | A | -2.2023 | |
238 | T | A | -1.9774 | |
239 | N | A | -2.8107 | |
240 | E | A | -2.9512 | |
241 | Q | A | -1.9690 | |
242 | C | A | -0.5074 | |
243 | A | A | -0.8151 | |
244 | Q | A | -1.8563 | |
245 | K | A | -2.6290 | |
246 | A | A | -1.9872 | |
247 | E | A | -2.2886 | |
248 | P | A | -1.6417 | |
249 | T | A | -1.5030 | |
250 | E | A | -1.8661 | |
251 | S | A | -1.1692 | |
252 | C | A | -0.9485 | |
253 | E | A | -1.6483 | |
254 | Q | A | -0.9749 | |
255 | I | A | 1.3856 | |
256 | A | A | 1.2693 | |
257 | V | A | 1.9872 | |
258 | Q | A | 0.2873 | |
259 | V | A | 0.6046 | |
260 | N | A | -1.3464 | |
261 | N | A | -2.2793 | |
262 | G | A | -2.2865 | |
263 | D | A | -2.4130 | |
264 | A | A | -1.5641 | |
265 | G | A | -2.0716 | |
266 | R | A | -2.7613 | |
267 | E | A | -2.3806 | |
268 | M | A | -0.2077 | |
269 | P | A | 0.1777 | |
270 | C | A | 1.0585 | |
271 | P | A | 0.8680 | |
272 | L | A | 1.6086 | |
273 | P | A | 0.6113 | |
274 | C | A | -0.2945 | |
275 | D | A | -2.7332 | |
276 | E | A | -3.4902 | |
277 | E | A | -3.2371 | |
278 | S | A | -2.0234 | |
279 | P | A | -1.6600 | |
280 | E | A | -2.2439 | |
281 | A | A | -1.4591 | |
282 | E | A | -1.8141 | |
283 | L | A | -0.2934 | |
284 | H | A | -1.5814 | |
285 | N | A | -1.9888 | |
286 | H | A | -1.7417 | |
287 | G | A | -0.4745 | |
288 | I | A | 1.2243 | |
289 | Q | A | 0.1193 | |
290 | I | A | 1.3129 | |
291 | N | A | -0.3269 | |
292 | S | A | 0.1047 | |
293 | C | A | 0.6854 | |
294 | S | A | 0.4513 | |
295 | V | A | 1.6074 | |
296 | R | A | 0.0863 | |
297 | L | A | 1.7726 | |
298 | V | A | 1.7020 | |
299 | D | A | -0.4741 | |
300 | I | A | 0.3103 | |
301 | K | A | -2.5275 | |
302 | K | A | -3.5858 | |
303 | E | A | -3.4743 | |
304 | K | A | -2.8854 | |
305 | P | A | -0.9888 | |
306 | F | A | 0.7051 | |
307 | S | A | -0.3825 | |
308 | N | A | -1.4162 | |
309 | S | A | -1.1753 | |
310 | K | A | -1.6419 | |
311 | V | A | 0.1189 | |
312 | E | A | -1.1281 | |
313 | C | A | -0.3959 | |
314 | Q | A | -1.4013 | |
315 | A | A | -0.9928 | |
316 | Q | A | -1.7964 | |
317 | A | A | -1.4609 | |
318 | R | A | -2.3493 | |
319 | T | A | -1.6867 | |
320 | H | A | -2.3446 | |
321 | H | A | -2.3749 | |
322 | N | A | -2.5735 | |
323 | Q | A | -2.3689 | |
324 | A | A | -1.3202 | |
325 | S | A | -0.7314 | |
326 | D | A | -0.2684 | |
327 | I | A | 2.8111 | |
328 | I | A | 3.8390 | |
329 | V | A | 3.9720 | |
330 | I | A | 3.2693 | |
331 | S | A | 0.6913 | |
332 | S | A | -0.9671 | |
333 | E | A | -2.8863 | |
334 | D | A | -3.3092 | |
335 | S | A | -2.5976 | |
336 | E | A | -2.8209 | |
337 | G | A | -1.5328 | |
338 | S | A | -1.3025 | |
339 | T | A | -0.8907 | |
340 | D | A | -1.3589 | |
341 | V | A | -0.3215 | |
342 | D | A | -2.2102 | |
343 | E | A | -2.1622 | |
344 | P | A | -1.2728 | |
345 | L | A | 0.5543 | |
346 | E | A | 0.1643 | |
347 | V | A | 2.5857 | |
348 | F | A | 3.3749 | |
349 | I | A | 3.2724 | |
350 | S | A | 1.1548 | |
351 | A | A | -0.2088 | |
352 | P | A | -1.2165 | |
353 | R | A | -2.4570 | |
354 | S | A | -1.9129 | |
355 | E | A | -1.8268 | |
356 | P | A | -0.0232 | |
357 | V | A | 1.8772 | |
358 | I | A | 1.7095 | |
359 | N | A | -0.9551 | |
360 | N | A | -2.5830 | |
361 | D | A | -3.3730 | |
362 | N | A | -2.2062 | |
363 | P | A | -0.9138 | |
364 | L | A | 0.1847 | |
365 | E | A | -1.5164 | |
366 | S | A | -1.8762 | |
367 | N | A | -3.3020 | |
368 | D | A | -3.9541 | |
369 | E | A | -4.3283 | |
370 | K | A | -4.3040 | |
371 | E | A | -4.0226 | |
372 | G | A | -3.0505 | |
373 | Q | A | -2.9479 | |
374 | E | A | -2.6339 | |
375 | A | A | -1.0769 | |
376 | T | A | -0.6608 | |
377 | C | A | -0.1670 | |
378 | S | A | -1.0196 | |
379 | R | A | -1.9399 | |
380 | P | A | -0.8561 | |
381 | Q | A | -0.3815 | |
382 | I | A | 1.6338 | |
383 | V | A | 1.7094 | |
384 | P | A | -0.1782 | |
385 | E | A | -1.3223 | |
386 | P | A | -0.9923 | |
387 | M | A | -1.2835 | |
388 | D | A | -1.6685 | |
389 | F | A | -1.7440 | |
390 | R | A | -2.6063 | |
391 | K | A | -2.6396 | |
392 | L | A | 0.0000 | |
393 | S | A | -1.9664 | |
394 | T | A | -1.7839 | |
395 | F | A | 0.0000 | |
396 | R | A | -2.2384 | |
397 | E | A | -2.9216 | |
398 | S | A | -2.3412 | |
399 | F | A | 0.0000 | |
400 | K | A | -2.6927 | |
401 | K | A | -3.0046 | |
402 | R | A | -2.7044 | |
403 | V | A | -1.7504 | |
404 | I | A | -1.1189 | |
405 | G | A | -2.3411 | |
406 | Q | A | -2.5679 | |
407 | D | A | -2.5346 | |
408 | H | A | -2.4754 | |
409 | D | A | -2.4425 | |
410 | F | A | -0.6371 | |
411 | S | A | -1.3374 | |
412 | E | A | -2.0835 | |
413 | S | A | -1.7759 | |
414 | S | A | -2.5566 | |
415 | E | A | -3.6067 | |
416 | E | A | -3.6966 | |
417 | E | A | -3.2650 | |
418 | A | A | -1.8776 | |
419 | P | A | -1.2958 | |
420 | A | A | -1.1671 | |
421 | E | A | -1.8686 | |
422 | A | A | -1.0516 | |
423 | S | A | -0.8086 | |
424 | S | A | -0.5156 | |
425 | G | A | -0.2483 | |
426 | A | A | 0.1470 | |
427 | L | A | 0.5077 | |
428 | R | A | -1.5155 | |
429 | S | A | -1.8669 | |
430 | K | A | -2.7866 | |
431 | H | A | -2.5195 | |
432 | G | A | -2.5712 | |
433 | E | A | -3.1053 | |
434 | K | A | -2.7519 | |
435 | A | A | -1.0626 | |
436 | P | A | -0.1082 | |
437 | M | A | 0.8607 | |
438 | T | A | -0.1193 | |
439 | S | A | -0.9553 | |
440 | R | A | -2.1067 | |
441 | S | A | -1.2690 | |
442 | T | A | -0.5958 | |
443 | S | A | -0.4556 | |
444 | T | A | 0.1010 | |
445 | W | A | 0.6470 | |
446 | R | A | -0.4834 | |
447 | I | A | 0.9096 | |
448 | P | A | -0.4258 | |
449 | S | A | -1.6401 | |
450 | R | A | -3.2702 | |
451 | K | A | -3.8142 | |
452 | R | A | -3.5832 | |
453 | R | A | -2.5057 | |
454 | F | A | 0.1887 | |
455 | S | A | -0.2842 | |
456 | S | A | -0.3468 | |
457 | S | A | -0.6136 | |
458 | D | A | -1.2036 | |
459 | F | A | 0.4931 | |
460 | S | A | -0.2381 | |
461 | D | A | -0.9234 | |
462 | L | A | 0.1798 | |
463 | S | A | -0.6376 | |
464 | N | A | -1.6858 | |
465 | G | A | -2.4640 | |
466 | E | A | -2.8856 | |
467 | E | A | -2.2992 | |
468 | L | A | -0.7120 | |
469 | Q | A | -1.7351 | |
470 | E | A | -1.9941 | |
471 | T | A | -0.9998 | |
472 | C | A | 0.1038 | |
473 | S | A | -0.0479 | |
474 | S | A | -0.0491 | |
475 | S | A | -0.2094 | |
476 | L | A | -0.0719 | |
477 | R | A | -2.2116 | |
478 | R | A | -2.6922 | |
479 | G | A | -1.8777 | |
480 | S | A | -1.7186 | |
481 | G | A | -2.1456 | |
482 | K | A | -3.2912 | |
483 | E | A | -3.8714 | |
484 | D | A | -3.7785 | |
485 | H | A | -2.9779 | |
486 | H | A | -2.5641 | |
487 | H | A | -2.3850 | |
488 | H | A | -2.3961 | |
489 | H | A | -2.2276 | |
490 | H | A | -1.7514 |
Calculations for various pH values
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | -0.8204 | 5.978 | View | CSV | PDB |
4.5 | -0.9571 | 5.9144 | View | CSV | PDB |
5.0 | -1.1298 | 5.8283 | View | CSV | PDB |
5.5 | -1.3081 | 5.7343 | View | CSV | PDB |
6.0 | -1.4623 | 5.6467 | View | CSV | PDB |
6.5 | -1.5726 | 5.5804 | View | CSV | PDB |
7.0 | -1.6374 | 5.5427 | View | CSV | PDB |
7.5 | -1.6706 | 5.5267 | View | CSV | PDB |
8.0 | -1.6865 | 5.521 | View | CSV | PDB |
8.5 | -1.6891 | 5.5192 | View | CSV | PDB |
9.0 | -1.675 | 5.5186 | View | CSV | PDB |