| Chain sequence(s) |
A: GAVVYSSGSLYFQ
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SN331A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.55943 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:05)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:08)
[INFO] Main: Simulation completed successfully. (00:00:08)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 326 | G | A | 0.1558 | |
| 327 | A | A | 2.0846 | |
| 328 | V | A | 3.4060 | |
| 329 | V | A | 3.7618 | |
| 330 | Y | A | 2.2411 | |
| 331 | N | A | -0.2804 | mutated: SN331A |
| 332 | G | A | 0.1299 | |
| 333 | S | A | 1.7390 | |
| 334 | L | A | 3.5886 | |
| 335 | Y | A | 3.6930 | |
| 336 | F | A | 2.7839 | |
| 337 | Q | A | 0.1114 |