Project name: df7cfce84ceda4a

Status: done

Started: 2025-04-28 23:01:08
Chain sequence(s) A: KLVFFA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log 
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:03)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/df7cfce84ceda4a/tmp/folded.pdb                (00:00:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues
Minimal score value
-0.3267
Maximal score value
3.9792
Average score
2.3368
Total score value
14.0209
Download the table (csv)

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
2 K A -0.3267
3 L A 2.0825
4 V A 3.5267
5 F A 3.9792
6 F A 3.3189
7 A A 1.4403
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 3.7406 7.245 View CSV PDB
4.5 3.7439 7.246 View CSV PDB
5.0 3.7537 7.2493 View CSV PDB
5.5 3.7806 7.2581 View CSV PDB
6.0 3.8415 7.2781 View CSV PDB
6.5 3.9444 7.3119 View CSV PDB
7.0 4.0772 7.3556 View CSV PDB
7.5 4.2237 7.4037 View CSV PDB
8.0 4.3752 7.4535 View CSV PDB
8.5 4.5278 7.5037 View CSV PDB
9.0 4.6793 7.5535 View CSV PDB