| Chain sequence(s) |
A: DVQLRESGGGKVQAGGSLRLSCTVSTSRFSGVGRMAWYRQAPGKQREKVAEITRAGSRTYADAVKGRFTISRDNAKNTVYLQMDRLKPEDTAVYWCVRARWQSGTPRTPGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | YH38A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 1.96256 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:41)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:46)
[INFO] Main: Simulation completed successfully. (00:00:46)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -1.9009 | |
| 2 | V | A | -1.6415 | |
| 3 | Q | A | -2.0050 | |
| 4 | L | A | -1.8917 | |
| 5 | R | A | -2.2603 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1869 | |
| 8 | G | A | -1.3278 | |
| 9 | G | A | -1.4980 | |
| 10 | G | A | -1.7009 | |
| 11 | K | A | -2.3059 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -2.1173 | |
| 14 | A | A | -2.0983 | |
| 15 | G | A | -1.8745 | |
| 16 | G | A | -1.7219 | |
| 17 | S | A | -1.8398 | |
| 18 | L | A | -1.8704 | |
| 19 | R | A | -2.3279 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -1.0011 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.2523 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.3561 | |
| 26 | T | A | -1.3026 | |
| 27 | S | A | -1.2283 | |
| 28 | R | A | -2.2654 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.7137 | |
| 31 | G | A | -1.7528 | |
| 32 | V | A | 0.0000 | |
| 33 | G | A | -2.0566 | |
| 34 | R | A | -2.6537 | |
| 35 | M | A | 0.0000 | |
| 36 | A | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | H | A | -0.8971 | mutated: YH38A |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -2.0115 | |
| 41 | A | A | -1.8227 | |
| 42 | P | A | -1.3122 | |
| 43 | G | A | -1.8203 | |
| 44 | K | A | -2.9894 | |
| 45 | Q | A | -2.7914 | |
| 46 | R | A | -2.3556 | |
| 47 | E | A | -2.3159 | |
| 48 | K | A | -1.4706 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | E | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | T | A | -2.1442 | |
| 54 | R | A | -2.7816 | |
| 55 | A | A | -1.4702 | |
| 56 | G | A | -1.6487 | |
| 57 | S | A | -1.5732 | |
| 58 | R | A | -1.9945 | |
| 59 | T | A | -1.2814 | |
| 60 | Y | A | -1.3243 | |
| 61 | A | A | -1.5929 | |
| 62 | D | A | -2.4032 | |
| 63 | A | A | -1.5979 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5797 | |
| 66 | G | A | -2.0043 | |
| 67 | R | A | -2.1595 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.2320 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.8816 | |
| 72 | R | A | -1.6197 | |
| 73 | D | A | -1.6991 | |
| 74 | N | A | -2.3479 | |
| 75 | A | A | -1.4990 | |
| 76 | K | A | -2.2871 | |
| 77 | N | A | -1.9639 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7721 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.7057 | |
| 83 | M | A | 0.0000 | |
| 84 | D | A | -2.6331 | |
| 85 | R | A | -2.9387 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.7186 | |
| 88 | P | A | -1.8498 | |
| 89 | E | A | -2.3018 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.3511 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4147 | |
| 94 | Y | A | 0.0000 | |
| 95 | W | A | -0.7210 | |
| 96 | C | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | R | A | -2.2544 | |
| 99 | A | A | -2.0708 | |
| 100 | R | A | -2.6470 | |
| 101 | W | A | -1.6202 | |
| 102 | Q | A | -1.8375 | |
| 103 | S | A | -1.0294 | |
| 104 | G | A | -0.8318 | |
| 105 | T | A | -0.8682 | |
| 106 | P | A | -1.0513 | |
| 107 | R | A | -2.2450 | |
| 108 | T | A | 0.0000 | |
| 109 | P | A | -1.0135 | |
| 110 | G | A | -1.0005 | |
| 111 | T | A | -0.9639 | |
| 112 | Q | A | -1.5581 | |
| 113 | V | A | 0.0000 | |
| 114 | T | A | -1.5963 | |
| 115 | V | A | 0.0000 | |
| 116 | S | A | -1.4396 | |
| 117 | S | A | -1.0425 |