Chain sequence(s) |
A: MSQEQPRRPQAGQDPIKYGDVLPVSGDLSQKPITPEDAAMMQSAESRVLGQTQPGGVASVMQSAATRNEQAGIVGHKDVTDVTGDRGVTVTETQVPGRRIITETVGGQVVGQFVEPTPVQVGLTGAVRESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGSNVITPGGLASMAQSAAAFNAECQREEEKIKMGNVLTGATAKLPADKAATRQDAAGVASAEMRNNPDATATPGGVAASVAAAARLNENVGNVM
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:02) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.4065 | |
2 | S | A | -0.9445 | |
3 | Q | A | -2.2632 | |
4 | E | A | -3.2559 | |
5 | Q | A | -3.3342 | |
6 | P | A | -2.8683 | |
7 | R | A | -3.7092 | |
8 | R | A | -3.4212 | |
9 | P | A | -2.4625 | |
10 | Q | A | -2.4774 | |
11 | A | A | -1.6193 | |
12 | G | A | -1.8675 | |
13 | Q | A | -2.5899 | |
14 | D | A | -2.3635 | |
15 | P | A | -1.8626 | |
16 | I | A | -1.2852 | |
17 | K | A | -1.4390 | |
18 | Y | A | 0.0000 | |
19 | G | A | -1.6998 | |
20 | D | A | -1.8625 | |
21 | V | A | -0.2250 | |
22 | L | A | 0.0000 | |
23 | P | A | -0.3322 | |
24 | V | A | 0.0000 | |
25 | S | A | -1.1871 | |
26 | G | A | -1.7046 | |
27 | D | A | -2.4840 | |
28 | L | A | -1.7857 | |
29 | S | A | -1.9012 | |
30 | Q | A | -2.3960 | |
31 | K | A | -1.8362 | |
32 | P | A | -0.8894 | |
33 | I | A | 0.0000 | |
34 | T | A | 0.0000 | |
35 | P | A | -1.4084 | |
36 | E | A | -1.2291 | |
37 | D | A | 0.0000 | |
38 | A | A | 0.0000 | |
39 | A | A | -0.3074 | |
40 | M | A | 0.1625 | |
41 | M | A | 0.0000 | |
42 | Q | A | -1.0560 | |
43 | S | A | -0.8698 | |
44 | A | A | -0.7681 | |
45 | E | A | 0.0000 | |
46 | S | A | -1.6538 | |
47 | R | A | -2.1269 | |
48 | V | A | -1.0549 | |
49 | L | A | -0.9849 | |
50 | G | A | -1.5046 | |
51 | Q | A | -1.8849 | |
52 | T | A | -1.3190 | |
53 | Q | A | -0.9389 | |
54 | P | A | -0.7316 | |
55 | G | A | -0.5865 | |
56 | G | A | -0.4101 | |
57 | V | A | 0.0000 | |
58 | A | A | 0.0000 | |
59 | S | A | -0.3598 | |
60 | V | A | 0.2850 | |
61 | M | A | 0.0000 | |
62 | Q | A | -0.7773 | |
63 | S | A | -0.7332 | |
64 | A | A | 0.0000 | |
65 | A | A | 0.0000 | |
66 | T | A | -1.8437 | |
67 | R | A | -2.6794 | |
68 | N | A | 0.0000 | |
69 | E | A | -2.4104 | |
70 | Q | A | -2.3366 | |
71 | A | A | -2.0732 | |
72 | G | A | -1.4993 | |
73 | I | A | -0.7713 | |
74 | V | A | 0.0000 | |
75 | G | A | -1.8703 | |
76 | H | A | -2.4234 | |
77 | K | A | -2.5259 | |
78 | D | A | -1.9203 | |
79 | V | A | -0.1095 | |
80 | T | A | -0.6852 | |
81 | D | A | -1.5465 | |
82 | V | A | -1.4158 | |
83 | T | A | -1.8813 | |
84 | G | A | -2.3143 | |
85 | D | A | -2.9803 | |
86 | R | A | -3.1072 | |
87 | G | A | -1.8836 | |
88 | V | A | 0.0000 | |
89 | T | A | -0.3376 | |
90 | V | A | -0.4148 | |
91 | T | A | -0.9333 | |
92 | E | A | -1.2876 | |
93 | T | A | -1.2018 | |
94 | Q | A | -1.9234 | |
95 | V | A | -0.9238 | |
96 | P | A | -0.8021 | |
97 | G | A | -1.0085 | |
98 | R | A | -1.8430 | |
99 | R | A | -1.5615 | |
100 | I | A | -0.5793 | |
101 | I | A | 0.0000 | |
102 | T | A | -0.0537 | |
103 | E | A | 0.0000 | |
104 | T | A | -0.1492 | |
105 | V | A | 0.0000 | |
106 | G | A | -1.5248 | |
107 | G | A | -1.2182 | |
108 | Q | A | -0.2772 | |
109 | V | A | 0.8072 | |
110 | V | A | 0.0000 | |
111 | G | A | -0.1005 | |
112 | Q | A | -0.2850 | |
113 | F | A | 0.4506 | |
114 | V | A | 0.7305 | |
115 | E | A | -0.5174 | |
116 | P | A | -0.8049 | |
117 | T | A | -0.9795 | |
118 | P | A | -0.1279 | |
119 | V | A | 1.1695 | |
120 | Q | A | 0.3459 | |
121 | V | A | 1.5327 | |
122 | G | A | 0.7681 | |
123 | L | A | 1.8060 | |
124 | T | A | 0.8248 | |
125 | G | A | 0.4236 | |
126 | A | A | 0.5439 | |
127 | V | A | 0.5969 | |
128 | R | A | -1.6210 | |
129 | E | A | -1.4894 | |
130 | S | A | -0.7933 | |
131 | A | A | -0.3021 | |
132 | L | A | 0.0030 | |
133 | T | A | -0.4844 | |
134 | I | A | 0.0000 | |
135 | G | A | 0.0000 | |
136 | E | A | -1.0330 | |
137 | A | A | 0.0000 | |
138 | L | A | 0.0000 | |
139 | E | A | -1.0428 | |
140 | A | A | -0.7936 | |
141 | T | A | 0.0000 | |
142 | A | A | -1.4017 | |
143 | H | A | -1.3751 | |
144 | T | A | -0.8965 | |
145 | V | A | -0.9417 | |
146 | G | A | -1.7686 | |
147 | D | A | -2.3723 | |
148 | K | A | -1.6943 | |
149 | P | A | -1.9630 | |
150 | V | A | 0.0000 | |
151 | E | A | -2.0037 | |
152 | Q | A | -2.0651 | |
153 | S | A | 0.0000 | |
154 | D | A | 0.0000 | |
155 | A | A | 0.0000 | |
156 | S | A | 0.0000 | |
157 | A | A | 0.0000 | |
158 | I | A | 0.0000 | |
159 | Q | A | -0.1027 | |
160 | A | A | 0.0000 | |
161 | A | A | 0.0000 | |
162 | E | A | 0.0000 | |
163 | V | A | -0.0465 | |
164 | R | A | -1.0342 | |
165 | A | A | 0.0000 | |
166 | T | A | -0.6049 | |
167 | G | A | -0.7704 | |
168 | S | A | -0.0857 | |
169 | N | A | -0.2384 | |
170 | V | A | 1.7315 | |
171 | I | A | 1.7491 | |
172 | T | A | 0.6956 | |
173 | P | A | 0.0811 | |
174 | G | A | -0.4666 | |
175 | G | A | -0.2384 | |
176 | L | A | 0.0000 | |
177 | A | A | 0.0000 | |
178 | S | A | -0.0025 | |
179 | M | A | -0.1450 | |
180 | A | A | 0.0000 | |
181 | Q | A | -0.5450 | |
182 | S | A | 0.1225 | |
183 | A | A | 0.0000 | |
184 | A | A | 0.0000 | |
185 | A | A | -0.0452 | |
186 | F | A | 0.6526 | |
187 | N | A | 0.0000 | |
188 | A | A | -0.9123 | |
189 | E | A | -1.7801 | |
190 | C | A | -2.2324 | |
191 | Q | A | -3.2167 | |
192 | R | A | -4.4709 | |
193 | E | A | -4.3026 | |
194 | E | A | -4.0124 | |
195 | E | A | -3.1196 | |
196 | K | A | -2.6390 | |
197 | I | A | -0.9893 | |
198 | K | A | -2.1519 | |
199 | M | A | 0.0000 | |
200 | G | A | -1.5839 | |
201 | N | A | -1.5759 | |
202 | V | A | 0.0000 | |
203 | L | A | 0.0000 | |
204 | T | A | -0.8575 | |
205 | G | A | -0.6920 | |
206 | A | A | 0.0000 | |
207 | T | A | -0.8043 | |
208 | A | A | -0.5720 | |
209 | K | A | -0.8873 | |
210 | L | A | 0.0000 | |
211 | P | A | -0.6045 | |
212 | A | A | -0.6813 | |
213 | D | A | -1.0538 | |
214 | K | A | -1.1165 | |
215 | A | A | -0.4787 | |
216 | A | A | 0.0000 | |
217 | T | A | -1.6900 | |
218 | R | A | -2.9245 | |
219 | Q | A | -2.1537 | |
220 | D | A | 0.0000 | |
221 | A | A | 0.0000 | |
222 | A | A | -0.9002 | |
223 | G | A | -0.7303 | |
224 | V | A | 0.0000 | |
225 | A | A | -0.2792 | |
226 | S | A | -0.5836 | |
227 | A | A | -0.8285 | |
228 | E | A | 0.0000 | |
229 | M | A | -1.2143 | |
230 | R | A | -2.4641 | |
231 | N | A | -2.6267 | |
232 | N | A | -2.1764 | |
233 | P | A | -1.7894 | |
234 | D | A | -2.2484 | |
235 | A | A | -1.4623 | |
236 | T | A | -0.9496 | |
237 | A | A | -0.4429 | |
238 | T | A | -0.2884 | |
239 | P | A | -0.3164 | |
240 | G | A | -0.3643 | |
241 | G | A | 0.0000 | |
242 | V | A | 0.0000 | |
243 | A | A | 0.0000 | |
244 | A | A | -0.0852 | |
245 | S | A | -0.4379 | |
246 | V | A | 0.0000 | |
247 | A | A | -0.8398 | |
248 | A | A | -0.3994 | |
249 | A | A | 0.0000 | |
250 | A | A | 0.0000 | |
251 | R | A | -1.9938 | |
252 | L | A | 0.0752 | |
253 | N | A | -1.1070 | |
254 | E | A | -1.8443 | |
255 | N | A | -1.3646 | |
256 | V | A | -0.3435 | |
257 | G | A | -0.7919 | |
258 | N | A | -0.7547 | |
259 | V | A | 1.3493 | |
260 | M | A | 1.3826 |