| Chain sequence(s) |
A: DSGPIICAGPIHSNKSADIPHLLGYSEKICQIDRLIHVSSWLRNHSQFQGYVGQRGGRSQVSYYPAENSYSRWSGLLSPCDADWLGMLVVKKAKGSDMIVPGPSYKGKVFFERPTFDGYVGWGCGSGKSRTESGELCSSDSGTSSGLLPSDRVLWIG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | LM88A,MK87A,FY116A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.394205 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:48)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:25)
[INFO] Main: Simulation completed successfully. (00:01:26)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -1.9430 | |
| 2 | S | A | -1.1849 | |
| 3 | G | A | -0.6599 | |
| 4 | P | A | -0.0141 | |
| 5 | I | A | 1.2424 | |
| 6 | I | A | 1.9465 | |
| 7 | C | A | 1.1506 | |
| 8 | A | A | 0.1995 | |
| 9 | G | A | -0.7604 | |
| 10 | P | A | 0.0000 | |
| 11 | I | A | 0.3639 | |
| 12 | H | A | -0.6137 | |
| 13 | S | A | -1.0616 | |
| 14 | N | A | -2.3360 | |
| 15 | K | A | -2.5780 | |
| 16 | S | A | -2.1395 | |
| 17 | A | A | -2.0410 | |
| 18 | D | A | -2.3429 | |
| 19 | I | A | 0.0000 | |
| 20 | P | A | -0.8849 | |
| 21 | H | A | -0.7586 | |
| 22 | L | A | 0.6810 | |
| 23 | L | A | 1.5907 | |
| 24 | G | A | 0.9172 | |
| 25 | Y | A | 1.3797 | |
| 26 | S | A | 0.4489 | |
| 27 | E | A | -0.1161 | |
| 28 | K | A | 0.2073 | |
| 29 | I | A | 0.6242 | |
| 30 | C | A | 0.5853 | |
| 31 | Q | A | 0.0000 | |
| 32 | I | A | 0.0000 | |
| 33 | D | A | 0.0000 | |
| 34 | R | A | -0.4914 | |
| 35 | L | A | 0.0000 | |
| 36 | I | A | 0.0000 | |
| 37 | H | A | 0.0000 | |
| 38 | V | A | 0.0000 | |
| 39 | S | A | 0.0000 | |
| 40 | S | A | 0.0000 | |
| 41 | W | A | 0.0000 | |
| 42 | L | A | 0.0000 | |
| 43 | R | A | -2.2235 | |
| 44 | N | A | -2.0340 | |
| 45 | H | A | -1.9760 | |
| 46 | S | A | -1.6598 | |
| 47 | Q | A | -2.1860 | |
| 48 | F | A | 0.0000 | |
| 49 | Q | A | -2.3206 | |
| 50 | G | A | -1.7166 | |
| 51 | Y | A | 0.0000 | |
| 52 | V | A | 0.0000 | |
| 53 | G | A | 0.0000 | |
| 54 | Q | A | -1.1342 | |
| 55 | R | A | -1.8050 | |
| 56 | G | A | -1.7126 | |
| 57 | G | A | 0.0000 | |
| 58 | R | A | 0.0000 | |
| 59 | S | A | -0.7418 | |
| 60 | Q | A | -1.8941 | |
| 61 | V | A | 0.0000 | |
| 62 | S | A | -0.3747 | |
| 63 | Y | A | 0.3847 | |
| 64 | Y | A | 0.7724 | |
| 65 | P | A | -0.1818 | |
| 66 | A | A | -0.8549 | |
| 67 | E | A | -2.4066 | |
| 68 | N | A | -2.1500 | |
| 69 | S | A | -0.8578 | |
| 70 | Y | A | 0.3343 | |
| 71 | S | A | -0.6607 | |
| 72 | R | A | -1.8971 | |
| 73 | W | A | 0.0407 | |
| 74 | S | A | -0.0110 | |
| 75 | G | A | 0.2976 | |
| 76 | L | A | 0.8081 | |
| 77 | L | A | 0.8442 | |
| 78 | S | A | 0.2489 | |
| 79 | P | A | 0.1233 | |
| 80 | C | A | 0.0000 | |
| 81 | D | A | 0.0000 | |
| 82 | A | A | 0.0000 | |
| 83 | D | A | -0.4958 | |
| 84 | W | A | 0.0784 | |
| 85 | L | A | 0.2900 | |
| 86 | G | A | -0.8845 | |
| 87 | K | A | -1.3499 | mutated: MK87A |
| 88 | M | A | 0.0688 | mutated: LM88A |
| 89 | V | A | 0.1565 | |
| 90 | V | A | 0.0000 | |
| 91 | K | A | -2.2997 | |
| 92 | K | A | -2.8938 | |
| 93 | A | A | -2.1533 | |
| 94 | K | A | -2.6026 | |
| 95 | G | A | -1.7216 | |
| 96 | S | A | -0.8551 | |
| 97 | D | A | -0.9067 | |
| 98 | M | A | 0.4039 | |
| 99 | I | A | 0.2818 | |
| 100 | V | A | 0.4467 | |
| 101 | P | A | -0.1788 | |
| 102 | G | A | -0.0932 | |
| 103 | P | A | -0.4679 | |
| 104 | S | A | -1.3643 | |
| 105 | Y | A | 0.0000 | |
| 106 | K | A | -2.8003 | |
| 107 | G | A | -2.0076 | |
| 108 | K | A | -1.6148 | |
| 109 | V | A | 0.0000 | |
| 110 | F | A | 0.0000 | |
| 111 | F | A | 0.0000 | |
| 112 | E | A | 0.0000 | |
| 113 | R | A | -0.2015 | |
| 114 | P | A | -0.1765 | |
| 115 | T | A | -0.0001 | |
| 116 | Y | A | 0.4499 | mutated: FY116A |
| 117 | D | A | -1.1278 | |
| 118 | G | A | -0.3996 | |
| 119 | Y | A | -0.3171 | |
| 120 | V | A | 0.0000 | |
| 121 | G | A | 0.0000 | |
| 122 | W | A | 0.0000 | |
| 123 | G | A | -0.4753 | |
| 124 | C | A | 0.0000 | |
| 125 | G | A | -1.1375 | |
| 126 | S | A | -1.3527 | |
| 127 | G | A | -1.2163 | |
| 128 | K | A | -1.3058 | |
| 129 | S | A | 0.0000 | |
| 130 | R | A | 0.0000 | |
| 131 | T | A | -1.7501 | |
| 132 | E | A | -2.8833 | |
| 133 | S | A | -1.6136 | |
| 134 | G | A | 0.0000 | |
| 135 | E | A | -1.1432 | |
| 136 | L | A | 0.4171 | |
| 137 | C | A | -0.1651 | |
| 138 | S | A | -0.7664 | |
| 139 | S | A | -0.9852 | |
| 140 | D | A | -1.3962 | |
| 141 | S | A | -1.0405 | |
| 142 | G | A | -0.9514 | |
| 143 | T | A | 0.0000 | |
| 144 | S | A | -0.8650 | |
| 145 | S | A | -0.7027 | |
| 146 | G | A | -1.0368 | |
| 147 | L | A | -0.4663 | |
| 148 | L | A | 0.0000 | |
| 149 | P | A | -1.3392 | |
| 150 | S | A | 0.0000 | |
| 151 | D | A | -2.2579 | |
| 152 | R | A | -1.5184 | |
| 153 | V | A | 0.0000 | |
| 154 | L | A | 0.0000 | |
| 155 | W | A | 0.0000 | |
| 156 | I | A | 0.2786 | |
| 157 | G | A | 0.0574 |