Project name: e9f06ab3130bba7

Status: done

Started: 2026-04-15 09:33:27
Chain sequence(s) A: MSGFNFGGTGAPTGGFTFGTAKTATTTPATGFSFSTSGTGGFNFGAPFQPATSTPSTGLFSLATQTPATQTTGFTFGTATLASGGTGFSLGIGASKLNLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTSGAPADTSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQERSFRITFD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:04)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:05:27)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/e9f06ab3130bba7/tmp/folded.pdb                (00:05:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:14)
Show buried residues

Minimal score value
-5.3506
Maximal score value
3.4208
Average score
-0.3753
Total score value
-195.886

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 1.0293
2 S A 0.4223
3 G A 0.4544
4 F A 1.5236
5 N A 0.3447
6 F A 1.3504
7 G A 0.0903
8 G A -0.4108
9 T A -0.4593
10 G A -0.6325
11 A A -0.3187
12 P A -0.5218
13 T A -0.5100
14 G A -0.3687
15 G A 0.1381
16 F A 1.9938
17 T A 1.5284
18 F A 2.0900
19 G A 0.4292
20 T A -0.2161
21 A A -0.9024
22 K A -1.7087
23 T A -0.8651
24 A A -0.3747
25 T A -0.1051
26 T A -0.1942
27 T A -0.2341
28 P A -0.3424
29 A A -0.2138
30 T A 0.1047
31 G A 0.3578
32 F A 1.9832
33 S A 1.4950
34 F A 2.1215
35 S A 0.7273
36 T A 0.0294
37 S A -0.5866
38 G A -0.8142
39 T A -0.4783
40 G A -0.5068
41 G A -0.1489
42 F A 1.4243
43 N A 0.3338
44 F A 1.5294
45 G A 0.3857
46 A A 0.3027
47 P A 0.4638
48 F A 1.1363
49 Q A -0.4213
50 P A -0.4206
51 A A -0.2340
52 T A -0.3767
53 S A -0.3503
54 T A -0.3576
55 P A -0.4595
56 S A -0.4853
57 T A -0.1068
58 G A 0.6897
59 L A 2.1730
60 F A 2.8678
61 S A 1.7718
62 L A 1.9313
63 A A 0.6342
64 T A -0.2893
65 Q A -1.3051
66 T A -0.7966
67 P A -0.5204
68 A A -0.4078
69 T A -0.7021
70 Q A -1.2678
71 T A -0.8171
72 T A -0.1982
73 G A 0.4091
74 F A 2.0596
75 T A 1.6249
76 F A 2.0998
77 G A 0.6956
78 T A 0.2174
79 A A 0.4416
80 T A 0.7214
81 L A 1.4974
82 A A 0.5864
83 S A -0.1073
84 G A -0.8458
85 G A -0.6953
86 T A -0.2222
87 G A 0.2148
88 F A 1.8687
89 S A 1.2751
90 L A 1.9968
91 G A 1.1270
92 I A 1.8427
93 G A 0.1796
94 A A -0.2343
95 S A -0.6708
96 K A -1.2503
97 L A 0.4056
98 N A -0.4445
99 L A 0.6548
100 S A -0.2685
101 N A -1.1097
102 T A -0.5189
103 A A -0.2590
104 A A -0.1471
105 T A -0.1448
106 P A -0.0184
107 A A 0.4562
108 M A 0.7836
109 A A -0.1997
110 N A -1.1739
111 P A -1.0398
112 S A -0.4267
113 G A 0.1720
114 F A 1.7383
115 G A 1.1936
116 L A 1.4737
117 G A -0.1016
118 S A -0.6141
119 S A -1.0906
120 N A -0.7231
121 L A 0.6178
122 T A -0.0775
123 N A -0.4809
124 A A 0.2312
125 I A 1.5823
126 S A 0.6649
127 S A 0.5133
128 T A 0.6239
129 V A 1.6067
130 T A 0.6234
131 S A -0.2546
132 S A -1.0157
133 Q A -1.5828
134 G A -1.1351
135 T A -0.5936
136 A A -0.3469
137 P A -0.3631
138 T A 0.1972
139 G A 1.2134
140 F A 2.9631
141 V A 3.4208
142 F A 2.8882
143 G A 0.6942
144 P A -0.1951
145 S A -0.3081
146 T A -0.3154
147 T A 0.1142
148 S A 0.5721
149 V A 1.6313
150 A A 0.7520
151 P A 0.1322
152 A A -0.1015
153 T A -0.1696
154 T A -0.3426
155 S A -0.5997
156 G A -0.3933
157 G A 0.3390
158 F A 1.9302
159 S A 1.5265
160 F A 2.0246
161 T A 0.5499
162 G A -0.4239
163 G A -0.6770
164 S A -0.5620
165 T A -0.5035
166 A A -0.6428
167 Q A -1.4213
168 P A -1.1088
169 S A -0.4570
170 G A -0.1076
171 F A 1.4930
172 N A 0.3923
173 I A 1.5618
174 G A 0.1304
175 S A -0.1530
176 A A -0.3808
177 G A -1.1399
178 N A -1.7219
179 S A -1.1632
180 A A -0.9746
181 Q A -1.4952
182 P A -0.9283
183 T A -0.4849
184 A A -0.2841
185 P A -0.2238
186 A A 0.2391
187 T A 0.5996
188 L A 1.8509
189 P A 1.3886
190 F A 2.0795
191 T A 0.7068
192 P A 0.1846
193 A A -0.1700
194 T A -0.2022
195 P A -0.2377
196 A A -0.0651
197 A A -0.0119
198 T A -0.0592
199 T A -0.1709
200 A A -0.2545
201 G A -0.4358
202 A A -0.4602
203 T A -0.7711
204 Q A -1.3397
205 P A -0.8745
206 A A -0.3639
207 A A -0.1534
208 P A -0.3240
209 T A -0.3430
210 P A -0.3668
211 T A 0.0052
212 A A 0.3971
213 T A 0.8705
214 I A 1.8901
215 T A 0.7190
216 S A 0.0973
217 T A -0.2547
218 G A -0.5670
219 P A 0.0053
220 S A 0.8255
221 L A 2.2333
222 F A 2.8429
223 A A 1.7920
224 S A 1.5319
225 I A 2.2007
226 A A 0.9288
227 T A 0.4004
228 A A 0.1608
229 P A -0.3496
230 T A -0.3313
231 S A -0.4030
232 S A -0.3571
233 A A -0.2079
234 T A -0.1013
235 T A 0.0178
236 G A 0.3475
237 L A 1.6422
238 S A 1.3320
239 L A 2.0756
240 C A 1.5022
241 T A 0.8828
242 P A 0.8720
243 V A 1.5841
244 T A 0.6472
245 T A 0.1714
246 A A -0.2312
247 G A -0.4906
248 A A -0.2885
249 P A -0.3941
250 T A -0.2551
251 A A -0.2756
252 G A -0.8523
253 T A -0.9752
254 Q A -1.1766
255 G A -0.1906
256 F A 1.4898
257 S A 0.7855
258 L A 0.9934
259 K A -0.9068
260 A A -0.6392
261 P A -0.7177
262 G A -0.7928
263 A A -0.2465
264 A A -0.2390
265 S A -0.4791
266 G A -0.6385
267 T A -0.4732
268 S A -0.4300
269 T A -0.2418
270 T A -0.2374
271 T A -0.2410
272 S A -0.2874
273 T A -0.1643
274 A A -0.0068
275 A A 0.0526
276 T A -0.0145
277 A A 0.0187
278 T A -0.0449
279 A A -0.0136
280 T A -0.1078
281 T A -0.2009
282 T A -0.2742
283 S A -0.4408
284 S A -0.5048
285 S A -0.4950
286 S A -0.5159
287 T A -0.2001
288 T A 0.0956
289 G A 0.5775
290 F A 1.9551
291 A A 1.4243
292 L A 1.6332
293 N A -0.0633
294 L A 0.7040
295 K A -0.8466
296 P A -0.0765
297 L A 1.1593
298 A A 0.3671
299 P A 0.1899
300 A A 0.3662
301 G A 0.3925
302 I A 1.6064
303 P A 0.2168
304 S A -0.5881
305 N A -1.4494
306 T A -0.8250
307 A A -0.2189
308 A A 0.3364
309 A A 0.9706
310 V A 1.7918
311 T A 0.7712
312 A A 0.2048
313 P A -0.4834
314 P A -0.6612
315 G A -0.8668
316 P A -0.7425
317 G A -0.6495
318 A A -0.2328
319 A A -0.1002
320 A A -0.1051
321 G A -0.3679
322 A A -0.1412
323 A A -0.0749
324 A A -0.1164
325 S A -0.1313
326 S A -0.0382
327 A A 0.3738
328 M A 0.7616
329 T A 0.5668
330 Y A 1.1213
331 A A 0.1785
332 Q A -0.5178
333 L A 0.3140
334 E A -0.6164
335 S A -0.8317
336 L A 0.1215
337 I A 0.3449
338 N A -0.8086
339 K A -0.6256
340 W A 0.7009
341 S A 0.1656
342 L A 0.0237
343 E A -1.1153
344 L A -0.9583
345 E A -2.8477
346 D A -3.1728
347 Q A -3.0608
348 E A -3.3197
349 R A -3.6967
350 H A -2.6002
351 F A -0.5054
352 L A -0.1444
353 Q A -1.5661
354 Q A -0.8685
355 A A -0.0353
356 T A -0.5469
357 Q A -0.6052
358 V A -0.4563
359 N A -1.8636
360 A A -1.1996
361 W A -0.6004
362 D A -1.8131
363 R A -2.1330
364 T A -1.0692
365 L A -0.0568
366 I A -0.0773
367 E A -2.3337
368 N A -1.6950
369 G A -0.9995
370 E A -2.3480
371 K A -2.1582
372 I A -0.6323
373 T A -1.4954
374 S A -1.5235
375 L A -0.9508
376 H A -1.9501
377 R A -3.3220
378 E A -2.5570
379 V A -0.9946
380 E A -2.9974
381 K A -2.9755
382 V A -1.2793
383 K A -2.4168
384 L A -1.5584
385 D A -2.3851
386 Q A -2.9336
387 K A -3.2870
388 R A -3.2190
389 L A -1.5490
390 D A -1.8578
391 Q A -1.6786
392 E A -0.4407
393 L A 0.8512
394 D A -0.1947
395 F A 1.7345
396 I A 1.9399
397 L A 1.1453
398 S A -0.6176
399 Q A -1.6178
400 Q A -2.1429
401 K A -3.2180
402 E A -3.4381
403 L A -2.1022
404 E A -3.2800
405 D A -3.0374
406 L A -0.7149
407 L A -0.6444
408 S A -1.0017
409 P A -0.7161
410 L A 0.0177
411 E A -1.7589
412 E A -2.3542
413 L A -0.1999
414 V A -0.3274
415 K A -2.7435
416 E A -2.6047
417 Q A -1.3909
418 S A -0.6373
419 G A -0.8045
420 T A 0.1599
421 I A 2.2611
422 Y A 2.3365
423 L A 1.4362
424 Q A -1.0337
425 H A -2.3602
426 A A -2.3857
427 D A -3.1048
428 E A -3.8291
429 E A -4.5666
430 R A -3.8036
431 E A -3.4799
432 K A -3.5735
433 T A -2.0656
434 Y A -0.9561
435 K A -2.2171
436 L A -0.2470
437 A A -0.6951
438 E A -2.1839
439 N A -1.6735
440 I A -0.3073
441 D A -1.7863
442 A A -1.7978
443 Q A -1.7592
444 L A -0.8325
445 K A -2.5669
446 R A -3.0442
447 M A -1.5116
448 A A -1.6426
449 Q A -2.8683
450 D A -2.5682
451 L A -0.7833
452 K A -2.1856
453 D A -2.0487
454 I A -0.2477
455 I A -0.0753
456 E A -2.1103
457 H A -1.2018
458 L A 0.1399
459 N A -1.3335
460 T A -0.9193
461 S A -0.5943
462 G A -0.9260
463 A A -1.2878
464 P A -1.0961
465 A A -1.1127
466 D A -2.2341
467 T A -1.3846
468 S A -1.3440
469 D A -1.2181
470 P A -0.4122
471 L A 1.0290
472 Q A -0.5524
473 Q A -0.7315
474 I A 0.9713
475 C A 0.1371
476 K A -1.3645
477 I A -0.0009
478 L A 0.0695
479 N A -1.2643
480 A A -0.9944
481 H A -0.7655
482 M A -0.0279
483 D A -1.3805
484 S A -0.3071
485 L A 0.4771
486 Q A -1.0252
487 W A 0.1596
488 I A 0.5598
489 D A -1.4649
490 Q A -1.2785
491 N A -0.4361
492 S A -0.8563
493 A A -0.8335
494 L A -0.3220
495 L A -0.0791
496 Q A -1.3606
497 R A -2.2697
498 K A -1.5581
499 V A 0.2564
500 E A -1.5321
501 E A -2.0620
502 V A 0.3737
503 T A -0.7690
504 K A -2.0769
505 V A -0.4387
506 C A -1.5724
507 E A -3.1808
508 G A -3.0666
509 R A -4.6347
510 R A -5.2595
511 K A -4.7635
512 E A -5.3506
513 Q A -4.5251
514 E A -4.2479
515 R A -3.7824
516 S A -1.4177
517 F A 0.0567
518 R A -1.1759
519 I A 0.9261
520 T A 1.1238
521 F A 1.4939
522 D A -0.5184
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 0.4745 6.1738 View CSV PDB
4.5 0.406 6.1738 View CSV PDB
5.0 0.3169 6.1738 View CSV PDB
5.5 0.2251 6.1738 View CSV PDB
6.0 0.149 6.1738 View CSV PDB
6.5 0.1008 6.1738 View CSV PDB
7.0 0.084 6.1738 View CSV PDB
7.5 0.0913 6.1738 View CSV PDB
8.0 0.1123 6.1738 View CSV PDB
8.5 0.1417 6.1738 View CSV PDB
9.0 0.1794 6.1738 View CSV PDB