| Chain sequence(s) |
A: DVQLRESGGGKVQAGGSLRLKCTVSTSRFSGVGRMAWRRQAPGKQREKVAEITRAGSRTYADAVKGRFTISRDNAKNTVKLQMDRLKPEDTAKYKCVRARWQSGTPRTPGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | KW95A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -2.88225 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:51)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:10)
[INFO] Main: Simulation completed successfully. (00:01:10)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -1.9043 | |
| 2 | V | A | -1.6458 | |
| 3 | Q | A | -2.0144 | |
| 4 | L | A | -1.9688 | |
| 5 | R | A | -2.3659 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.4315 | |
| 8 | G | A | -1.5326 | |
| 9 | G | A | -1.7050 | |
| 10 | G | A | -1.6922 | |
| 11 | K | A | -2.3041 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -2.1164 | |
| 14 | A | A | -2.0974 | |
| 15 | G | A | -1.8727 | |
| 16 | G | A | -1.7241 | |
| 17 | S | A | -1.7617 | |
| 18 | L | A | -1.8131 | |
| 19 | R | A | -2.4576 | |
| 20 | L | A | 0.0000 | |
| 21 | K | A | -1.8267 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.4797 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.3565 | |
| 26 | T | A | -1.3028 | |
| 27 | S | A | -1.2283 | |
| 28 | R | A | -2.2670 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.7147 | |
| 31 | G | A | -1.7651 | |
| 32 | V | A | 0.0000 | |
| 33 | G | A | -2.0971 | |
| 34 | R | A | -2.7322 | |
| 35 | M | A | 0.0000 | |
| 36 | A | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | R | A | -1.1975 | |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -2.3593 | |
| 41 | A | A | -2.0644 | |
| 42 | P | A | -1.4709 | |
| 43 | G | A | -1.8259 | |
| 44 | K | A | -3.0079 | |
| 45 | Q | A | -2.8484 | |
| 46 | R | A | -2.6118 | |
| 47 | E | A | -2.3246 | |
| 48 | K | A | -1.3727 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | E | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | T | A | -2.1799 | |
| 54 | R | A | -2.8074 | |
| 55 | A | A | -1.4816 | |
| 56 | G | A | -1.6613 | |
| 57 | S | A | -1.5834 | |
| 58 | R | A | -2.0037 | |
| 59 | T | A | -1.2568 | |
| 60 | Y | A | -1.2881 | |
| 61 | A | A | -1.5608 | |
| 62 | D | A | -2.4031 | |
| 63 | A | A | -1.5978 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5797 | |
| 66 | G | A | -2.0070 | |
| 67 | R | A | -2.0982 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.2111 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -1.1477 | |
| 72 | R | A | -1.8875 | |
| 73 | D | A | -1.8157 | |
| 74 | N | A | -2.3498 | |
| 75 | A | A | -1.4970 | |
| 76 | K | A | -2.2794 | |
| 77 | N | A | -1.9564 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | K | A | -1.6698 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5585 | |
| 83 | M | A | 0.0000 | |
| 84 | D | A | -2.5397 | |
| 85 | R | A | -2.9445 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.7191 | |
| 88 | P | A | -1.8491 | |
| 89 | E | A | -2.3017 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.5417 | |
| 92 | A | A | 0.0000 | |
| 93 | K | A | -1.4669 | |
| 94 | Y | A | 0.0000 | |
| 95 | W | A | 0.0000 | mutated: KW95A |
| 96 | C | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | R | A | -2.2667 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -2.6569 | |
| 101 | W | A | -1.6076 | |
| 102 | Q | A | -1.8315 | |
| 103 | S | A | -1.0258 | |
| 104 | G | A | -0.8282 | |
| 105 | T | A | -0.8821 | |
| 106 | P | A | -1.0949 | |
| 107 | R | A | -2.2625 | |
| 108 | T | A | 0.0000 | |
| 109 | P | A | -1.1904 | |
| 110 | G | A | -1.3396 | |
| 111 | T | A | -1.3697 | |
| 112 | Q | A | -1.9790 | |
| 113 | V | A | 0.0000 | |
| 114 | T | A | -1.7405 | |
| 115 | V | A | 0.0000 | |
| 116 | S | A | -1.4386 | |
| 117 | S | A | -1.0416 |