| Chain sequence(s) |
A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | K | A | -1.0800 | |
| 2 | V | A | 0.2893 | |
| 3 | F | A | 0.0000 | |
| 4 | E | A | -2.0476 | |
| 5 | R | A | -1.9454 | |
| 6 | C | A | -1.4548 | |
| 7 | E | A | -1.8693 | |
| 8 | L | A | 0.0000 | |
| 9 | A | A | 0.0000 | |
| 10 | R | A | -2.1103 | |
| 11 | T | A | -1.6132 | |
| 12 | L | A | 0.0000 | |
| 13 | K | A | -2.6111 | |
| 14 | R | A | -2.6482 | |
| 15 | L | A | -1.3840 | |
| 16 | G | A | -1.5592 | |
| 17 | M | A | 0.0000 | |
| 18 | D | A | -2.4595 | |
| 19 | G | A | -1.8977 | |
| 20 | Y | A | -1.7502 | |
| 21 | R | A | -2.6087 | |
| 22 | G | A | -1.6933 | |
| 23 | I | A | 0.0000 | |
| 24 | S | A | -1.4122 | |
| 25 | L | A | 0.0000 | |
| 26 | A | A | 0.0000 | |
| 27 | N | A | -1.1832 | |
| 28 | W | A | 0.0000 | |
| 29 | M | A | 0.0000 | |
| 30 | C | A | 0.0000 | |
| 31 | L | A | 0.0000 | |
| 32 | A | A | 0.0000 | |
| 33 | K | A | -0.8850 | |
| 34 | W | A | -0.3843 | |
| 35 | E | A | -0.3446 | |
| 36 | S | A | -0.7087 | |
| 37 | G | A | -0.5889 | |
| 38 | Y | A | 0.0000 | |
| 39 | N | A | -0.9192 | |
| 40 | T | A | 0.0000 | |
| 41 | R | A | -2.0363 | |
| 42 | A | A | -1.2269 | |
| 43 | T | A | -0.9915 | |
| 44 | N | A | -0.8760 | |
| 45 | Y | A | -0.2293 | |
| 46 | N | A | -1.2826 | |
| 47 | A | A | -1.2183 | |
| 48 | G | A | -1.6108 | |
| 49 | D | A | -2.5654 | |
| 50 | R | A | -2.9017 | |
| 51 | S | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | D | A | -0.6068 | |
| 54 | Y | A | 0.0000 | |
| 55 | G | A | 0.0000 | |
| 56 | I | A | 0.0000 | |
| 57 | F | A | 0.0000 | |
| 58 | Q | A | 0.0000 | |
| 59 | I | A | 0.0000 | |
| 60 | N | A | -0.2410 | |
| 61 | S | A | 0.0000 | |
| 62 | R | A | -0.2894 | |
| 63 | Y | A | 1.5692 | |
| 64 | W | A | 0.5306 | |
| 65 | C | A | 0.0000 | |
| 66 | N | A | -1.1807 | |
| 67 | D | A | -1.6492 | |
| 68 | G | A | -1.7888 | |
| 69 | K | A | -2.6031 | |
| 70 | T | A | 0.0000 | |
| 71 | P | A | -1.3997 | |
| 72 | G | A | -0.5816 | |
| 73 | A | A | 0.2391 | |
| 74 | V | A | 1.6994 | |
| 75 | N | A | 0.3311 | |
| 76 | A | A | 0.3676 | |
| 77 | C | A | -0.2563 | |
| 78 | H | A | -0.8342 | |
| 79 | L | A | -0.7293 | |
| 80 | S | A | -0.8405 | |
| 81 | C | A | 0.0000 | |
| 82 | S | A | -0.6276 | |
| 83 | A | A | -0.7297 | |
| 84 | L | A | 0.0000 | |
| 85 | L | A | -1.3612 | |
| 86 | Q | A | -2.1083 | |
| 87 | D | A | -2.3897 | |
| 88 | N | A | -2.2387 | |
| 89 | I | A | 0.0000 | |
| 90 | A | A | -0.8111 | |
| 91 | D | A | -0.9102 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.0000 | |
| 94 | A | A | -0.3379 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | K | A | -1.2804 | |
| 98 | R | A | -1.2068 | |
| 99 | V | A | 0.0000 | |
| 100 | V | A | 0.0000 | |
| 101 | R | A | -2.6314 | |
| 102 | D | A | -1.9544 | |
| 103 | P | A | -1.5573 | |
| 104 | Q | A | -1.8833 | |
| 105 | G | A | -1.9865 | |
| 106 | I | A | 0.0000 | |
| 107 | R | A | -1.2907 | |
| 108 | A | A | -0.5283 | |
| 109 | W | A | 0.0000 | |
| 110 | V | A | 0.6844 | |
| 111 | A | A | -0.3720 | |
| 112 | W | A | 0.0000 | |
| 113 | R | A | -1.9499 | |
| 114 | N | A | -2.2384 | |
| 115 | R | A | -2.3187 | |
| 116 | C | A | 0.0000 | |
| 117 | Q | A | -2.6571 | |
| 118 | N | A | -3.1434 | |
| 119 | R | A | -4.0940 | |
| 120 | D | A | -3.7435 | |
| 121 | V | A | -3.0100 | |
| 122 | R | A | -3.3884 | |
| 123 | Q | A | -2.7946 | |
| 124 | Y | A | 0.0000 | |
| 125 | V | A | -1.3876 | |
| 126 | Q | A | -2.1030 | |
| 127 | G | A | -1.1322 | |
| 128 | C | A | 0.0000 | |
| 129 | G | A | -0.3981 | |
| 130 | V | A | -0.0020 |