Project name: mi2699_6T13_monomer_static

Status: done

Started: 2026-05-29 18:43:30
Chain sequence(s) A: ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:05:26)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/eedc911fd058cc/tmp/folded.pdb                 (00:05:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:29)
Show buried residues

Minimal score value
-2.9446
Maximal score value
2.795
Average score
-0.4676
Total score value
-232.4041

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 A A -1.3858
2 R A -1.6211
3 P A -1.1134
4 C A -0.5701
5 I A 0.5041
6 P A -0.4499
7 K A -0.9011
8 S A -0.3854
9 F A 0.3365
10 G A -0.1021
11 Y A 0.0720
12 S A -0.5126
13 S A 0.0000
14 V A -0.3970
15 V A 0.0000
16 C A 0.0000
17 V A 0.0955
18 C A 0.0000
19 N A -0.7999
20 A A -0.6340
21 T A -0.1170
22 Y A -0.0878
23 C A 0.0000
24 D A -0.5451
25 S A -1.3458
26 F A -1.7294
27 D A -2.4138
28 P A -1.4087
29 P A -0.5986
30 T A 0.4179
31 F A 1.9151
32 P A 1.1640
33 A A 0.8276
34 L A 0.8098
35 G A 0.0390
36 T A 0.3889
37 F A 0.0000
38 S A 0.0000
39 R A -0.0967
40 Y A -0.5017
41 E A 0.0000
42 S A 0.0000
43 T A 0.0000
44 R A -1.4335
45 S A -1.0676
46 G A -1.5493
47 R A -2.5895
48 R A -1.7503
49 M A 0.0000
50 E A -2.0354
51 L A -0.3180
52 S A 0.0870
53 M A 0.6936
54 G A -0.0827
55 P A -0.2797
56 I A -0.4391
57 Q A -1.3967
58 A A -1.0160
59 N A -1.6468
60 H A -1.2889
61 T A -0.7810
62 G A -0.7075
63 T A -0.6401
64 G A -0.7632
65 L A 0.0000
66 L A -0.0888
67 L A 0.0000
68 T A 0.3125
69 L A 0.0000
70 Q A -1.2172
71 P A 0.0000
72 E A -2.7330
73 Q A -2.4840
74 K A -2.6855
75 F A -0.9913
76 Q A -1.0914
77 K A -2.2504
78 V A 0.0000
79 K A -0.9496
80 G A 0.0000
81 F A 0.0000
82 G A 0.0000
83 G A 0.0000
84 A A 0.0000
85 M A 0.0000
86 T A 0.0000
87 D A 0.0000
88 A A 0.0000
89 A A 0.0000
90 A A 0.0000
91 L A 0.4836
92 N A 0.0000
93 I A 0.0000
94 L A 0.4160
95 A A 0.5106
96 L A 0.0000
97 S A -0.2441
98 P A -0.4337
99 P A -0.5400
100 A A 0.0000
101 Q A 0.0000
102 N A -0.6879
103 L A -0.3986
104 L A 0.0000
105 L A 0.0000
106 K A -1.1706
107 S A 0.0000
108 Y A 0.0000
109 F A 0.0000
110 S A 0.0000
111 E A -2.4480
112 E A -2.1662
113 G A 0.0000
114 I A 0.0000
115 G A 0.0000
116 Y A 0.0000
117 N A 0.0000
118 I A 0.0000
119 I A 0.0000
120 R A 0.0000
121 V A 0.0000
122 P A 0.0000
123 M A 0.0000
124 A A 0.0000
125 S A 0.0000
126 C A 0.0000
127 D A 0.0000
128 F A 0.0000
129 S A 0.0000
130 I A 0.3746
131 R A -0.6239
132 T A -0.3180
133 Y A 0.0000
134 T A 0.0000
135 Y A 0.0000
136 A A 0.0000
137 D A -2.3448
138 T A -1.8123
139 P A -1.7292
140 D A -2.2216
141 D A -2.0483
142 F A -0.9065
143 Q A -1.8562
144 L A 0.0000
145 H A -1.9277
146 N A -2.1927
147 F A -1.3609
148 S A -0.9294
149 L A -0.5908
150 P A -0.8950
151 E A -1.9648
152 E A 0.0000
153 D A 0.0000
154 T A -1.3446
155 K A -2.0241
156 L A -0.7860
157 K A 0.0000
158 I A 0.0000
159 P A -0.7283
160 L A 0.0000
161 I A 0.0000
162 H A -1.0549
163 R A -0.9999
164 A A 0.0000
165 L A -0.3810
166 Q A -1.2505
167 L A -1.0009
168 A A -1.1754
169 Q A -1.8497
170 R A -1.0719
171 P A -0.6200
172 V A -0.1435
173 S A -0.0884
174 L A 0.0000
175 L A 0.0000
176 A A 0.0000
177 S A 0.0000
178 P A 0.0000
179 W A 0.0000
180 T A 0.0000
181 S A 0.0000
182 P A 0.0000
183 T A -0.8097
184 W A -0.9601
185 L A 0.0000
186 K A 0.0000
187 T A -1.0036
188 N A -1.2597
189 G A -0.7879
190 A A -0.6063
191 V A -0.2582
192 N A -0.6652
193 G A -0.9506
194 K A -1.4532
195 G A 0.0000
196 S A -0.8696
197 L A 0.0000
198 K A -1.1084
199 G A -1.2226
200 Q A -1.8480
201 P A -1.5522
202 G A -1.2263
203 D A -0.6042
204 I A 0.9811
205 Y A 0.0943
206 H A 0.0000
207 Q A -0.4682
208 T A 0.0000
209 W A 0.0000
210 A A 0.0000
211 R A -0.8359
212 Y A 0.0000
213 F A 0.0000
214 V A -0.7623
215 K A -0.8945
216 F A 0.0000
217 L A 0.0000
218 D A -1.8968
219 A A -1.4372
220 Y A 0.0000
221 A A -2.3578
222 E A -2.8897
223 H A -2.3883
224 K A -2.8782
225 L A 0.0000
226 Q A -1.9150
227 F A 0.0000
228 W A -0.4410
229 A A 0.0000
230 V A 0.0000
231 T A 0.0000
232 A A 0.0000
233 E A 0.0000
234 N A 0.0000
235 E A -0.1943
236 P A 0.0000
237 S A 0.1455
238 A A 0.0000
239 G A 0.0000
240 L A 0.3910
241 L A 0.7898
242 S A -0.3416
243 G A -0.5958
244 Y A -0.1376
245 P A -0.2275
246 F A 0.1141
247 Q A 0.0000
248 C A 0.0000
249 L A 0.0000
250 G A 0.0000
251 F A 0.0000
252 T A -0.4205
253 P A -0.8829
254 E A -1.3100
255 H A -1.1038
256 Q A 0.0000
257 R A -1.6747
258 D A -2.0566
259 F A 0.0000
260 I A 0.0000
261 A A -2.1763
262 R A -2.6746
263 D A 0.0000
264 L A 0.0000
265 G A 0.0000
266 P A -1.1113
267 T A -1.0272
268 L A 0.0000
269 A A -1.2070
270 N A -1.5322
271 S A -1.2574
272 T A -0.9742
273 H A -1.4996
274 H A -1.9795
275 N A -1.8461
276 V A -1.2631
277 R A -1.1364
278 L A 0.0000
279 L A 0.0000
280 M A 0.0000
281 L A 0.0000
282 D A 0.0000
283 D A 0.0000
284 Q A 0.4078
285 R A 0.0000
286 L A 1.5212
287 L A 0.5107
288 L A 0.0000
289 P A -0.6841
290 H A -1.0502
291 W A 0.0000
292 A A 0.0000
293 K A -0.9957
294 V A -0.8941
295 V A 0.0000
296 L A -0.7296
297 T A -0.7139
298 D A -1.6636
299 P A -1.8187
300 E A -2.9446
301 A A 0.0000
302 A A -1.6166
303 K A -2.2756
304 Y A -1.2224
305 V A 0.0000
306 H A -0.9404
307 G A 0.0000
308 I A 0.0000
309 A A 0.0000
310 V A 0.0000
311 H A 0.0000
312 W A 0.6372
313 Y A 0.9356
314 L A 1.8230
315 D A 1.5551
316 F A 2.7950
317 L A 2.6992
318 A A 0.0000
319 P A 0.1853
320 A A -0.3547
321 K A -1.9628
322 A A -0.9230
323 T A 0.0000
324 L A 0.0000
325 G A -1.3772
326 E A -1.5521
327 T A 0.0000
328 H A -1.5105
329 R A -2.2290
330 L A -0.8000
331 F A -0.8086
332 P A -1.3313
333 N A -1.5354
334 T A 0.0000
335 M A -0.6073
336 L A 0.0000
337 F A 0.0000
338 A A 0.0000
339 S A 0.0000
340 E A 0.0000
341 A A 0.0000
342 C A 0.0000
343 V A 0.0000
344 G A 0.0000
345 S A -0.2533
346 K A -0.3465
347 F A 1.5846
348 W A 1.3993
349 E A -0.0119
350 Q A -0.8180
351 S A -0.8091
352 V A 0.0000
353 R A -1.2094
354 L A -0.1551
355 G A 0.0000
356 S A 0.0000
357 W A 0.0000
358 D A -2.1111
359 R A 0.0000
360 G A 0.0000
361 M A -1.0452
362 Q A -1.0201
363 Y A 0.0000
364 S A 0.0000
365 H A -0.6128
366 S A 0.0000
367 I A 0.0000
368 I A 0.0000
369 T A -0.0861
370 N A 0.0000
371 L A 0.0000
372 L A 0.5221
373 Y A 0.1592
374 H A -0.2288
375 V A 0.0000
376 V A 0.0000
377 G A 0.0000
378 W A 0.0000
379 T A 0.0000
380 D A 0.0000
381 W A 0.0000
382 N A 0.0000
383 L A 0.0000
384 A A 0.0000
385 L A 0.0000
386 N A -0.5989
387 P A -1.0653
388 E A -2.2514
389 G A 0.0000
390 G A 0.0000
391 P A -0.4363
392 N A -0.5956
393 W A -0.1962
394 V A -0.5566
395 R A -1.9046
396 N A -0.9120
397 F A -1.0011
398 V A 0.0000
399 D A 0.0000
400 S A 0.0000
401 P A 0.0000
402 I A 0.0000
403 I A 0.0000
404 V A 0.0000
405 D A 0.0000
406 I A 0.3495
407 T A -0.4842
408 K A -1.6593
409 D A -1.0600
410 T A 0.0000
411 F A 0.0000
412 Y A 0.0000
413 K A 0.0000
414 Q A 0.0000
415 P A 0.0000
416 M A 0.0000
417 F A 0.0000
418 Y A 0.0000
419 H A 0.0000
420 L A 0.0000
421 G A 0.0000
422 H A 0.0000
423 F A 0.0000
424 S A 0.0000
425 K A -0.5278
426 F A 0.0000
427 I A 0.0000
428 P A -0.8136
429 E A -1.3034
430 G A -1.4648
431 S A 0.0000
432 Q A -1.6277
433 R A -0.9612
434 V A 0.0000
435 G A 0.0000
436 L A 0.6989
437 V A 1.2942
438 A A 0.1090
439 S A -0.6211
440 Q A -1.6369
441 K A -2.5451
442 N A -2.0258
443 D A -2.3605
444 L A -1.2240
445 D A -0.7206
446 A A -0.0109
447 V A 0.0000
448 A A 0.0000
449 L A 0.0000
450 M A 0.0000
451 H A -1.3437
452 P A -1.6267
453 D A -2.1441
454 G A -1.5389
455 S A -0.9824
456 A A 0.0000
457 V A 0.0000
458 V A 0.0000
459 V A 0.0000
460 V A 0.0000
461 L A 0.0000
462 N A 0.0000
463 R A -1.7500
464 S A -1.6504
465 S A -1.5698
466 K A -2.9418
467 D A -2.3468
468 V A -1.2201
469 P A -0.4450
470 L A 0.0000
471 T A 0.0000
472 I A 0.0000
473 K A -0.5586
474 D A 0.0000
475 P A -0.3153
476 A A -0.2811
477 V A -0.1454
478 G A -0.6807
479 F A -0.7774
480 L A 0.0000
481 E A -0.6890
482 T A 0.1677
483 I A 0.5306
484 S A 0.0000
485 P A -1.1399
486 G A -1.6307
487 Y A -1.2010
488 S A 0.0000
489 I A 0.0000
490 H A 0.0000
491 T A 0.0000
492 Y A 0.0000
493 L A 0.3492
494 W A 0.0000
495 H A -0.2977
496 R A -0.9899
497 Q A -1.2178
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.2476 5.8178 View CSV PDB
4.5 -0.2812 5.7814 View CSV PDB
5.0 -0.32 5.7411 View CSV PDB
5.5 -0.3558 5.6992 View CSV PDB
6.0 -0.3807 5.6569 View CSV PDB
6.5 -0.3898 5.6145 View CSV PDB
7.0 -0.3842 5.5723 View CSV PDB
7.5 -0.3695 5.5309 View CSV PDB
8.0 -0.3501 5.4917 View CSV PDB
8.5 -0.3265 5.4581 View CSV PDB
9.0 -0.2976 5.4348 View CSV PDB