Project name: f23573ba576754e

Status: done

Started: 2025-12-12 13:01:03
Chain sequence(s) A: MGSSHHHHHENLYFQGIIQDLASFIEGNIVGKDSFFDDEGFTGRFTFLNDAVEGDIVIRHKINGKGVEIAAGKNLACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKSTTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLVIEVSEVQGWLGNLMKHHAYLMVSAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAIGDGVTVLNYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDNGIFYEGKRILENKDLPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHENPLIVDDFAHNPDGIKATIAETRKLLAENQTLYIVCSIRGSRGVEINKLNVEALAESMDDNTKLVLSSSNDVVDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIGAQGMDPAEGLLENILRK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:04)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:19:51)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/f23573ba576754e/tmp/folded.pdb                (00:19:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:30:41)
Show buried residues

Minimal score value
-3.9458
Maximal score value
1.1669
Average score
-0.9962
Total score value
-491.1273

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.7505
2 G A -0.2270
3 S A -0.6801
4 S A -1.1963
5 H A -2.1006
6 H A -2.4344
7 H A -2.7806
8 H A -3.0316
9 H A -2.7602
10 E A -2.8587
11 N A -1.4881
12 L A 0.6372
13 Y A 1.1669
14 F A 0.8191
15 Q A -0.2938
16 G A -0.2056
17 I A 0.5220
18 I A 0.0000
19 Q A -0.7016
20 D A 0.0936
21 L A 0.0000
22 A A 0.0000
23 S A -0.8490
24 F A 0.1929
25 I A 0.0000
26 E A -2.3748
27 G A -1.8471
28 N A -1.6744
29 I A -0.7927
30 V A -1.3013
31 G A -2.5371
32 K A -2.3522
33 D A -2.1379
34 S A -1.4530
35 F A 0.0000
36 F A -1.4768
37 D A -2.3121
38 D A -2.9393
39 E A -2.8815
40 G A -1.4374
41 F A -0.6373
42 T A -0.8019
43 G A -0.1121
44 R A 0.0000
45 F A 0.0000
46 T A 0.0000
47 F A -0.3124
48 L A -0.3418
49 N A -1.0833
50 D A -0.7555
51 A A 0.0000
52 V A 0.3653
53 E A -1.3448
54 G A 0.0000
55 D A 0.0000
56 I A 0.0000
57 V A 0.0000
58 I A 0.0000
59 R A -1.4366
60 H A -1.4964
61 K A -1.8903
62 I A 0.0000
63 N A -2.8449
64 G A 0.0000
65 K A -2.6705
66 G A 0.0000
67 V A 0.0000
68 E A -2.1939
69 I A -0.8595
70 A A 0.0000
71 A A -1.2094
72 G A -0.9213
73 K A -0.9434
74 N A -1.1435
75 L A 0.0000
76 A A 0.0000
77 C A 0.0000
78 L A 0.0000
79 I A 0.0000
80 T A 0.0000
81 Q A -1.5295
82 T A -1.2611
83 P A -1.6018
84 Q A -2.3571
85 D A -3.0068
86 G A -2.4390
87 A A 0.0000
88 C A -2.0134
89 D A -3.4762
90 K A -3.5073
91 A A 0.0000
92 K A -3.7829
93 E A -3.6523
94 L A -2.2373
95 N A -2.9486
96 F A 0.0000
97 P A 0.0000
98 L A 0.0000
99 I A 0.0000
100 V A -0.8360
101 V A 0.0000
102 D A -2.7201
103 K A -1.9712
104 I A 0.0000
105 E A 0.0000
106 L A -0.3525
107 A A 0.0000
108 T A 0.0000
109 A A 0.0000
110 Y A 0.0000
111 A A 0.0000
112 L A 0.0000
113 K A -1.3133
114 W A -0.9544
115 T A 0.0000
116 V A 0.0000
117 E A -3.2435
118 K A -2.8341
119 F A 0.0000
120 S A 0.0000
121 P A -2.7100
122 D A -3.0291
123 S A -2.2740
124 K A -1.7310
125 N A 0.0000
126 V A 0.0000
127 I A 0.0000
128 I A 0.0000
129 T A 0.0000
130 G A 0.0000
131 T A 0.0000
132 N A -0.6598
133 G A -0.4545
134 K A -0.3427
135 S A -0.9203
136 T A -0.6067
137 T A 0.0000
138 S A 0.0000
139 H A -0.7902
140 L A 0.0000
141 I A 0.0000
142 Y A -0.7485
143 H A -1.3185
144 I A 0.0000
145 L A 0.0000
146 K A -2.3402
147 N A -2.6841
148 T A -1.9307
149 G A -1.2735
150 V A -0.8783
151 H A -1.4753
152 V A 0.0000
153 L A -0.1360
154 T A -0.3169
155 N A 0.0000
156 T A 0.0000
157 D A -2.9502
158 S A -2.5414
159 E A -3.1502
160 S A -2.2574
161 E A -2.3512
162 F A -0.4034
163 N A 0.0000
164 T A -0.0493
165 L A 0.0000
166 I A 0.1449
167 D A -0.4226
168 P A 0.0000
169 M A 0.2625
170 V A 0.0000
171 S A 0.0000
172 K A -0.2999
173 L A -0.0216
174 I A 0.0000
175 S A 0.0000
176 D A -1.6103
177 E A -1.9926
178 V A -2.2749
179 K A -3.0893
180 N A -3.1132
181 N A -2.9318
182 G A -2.6591
183 K A -3.0577
184 L A 0.0000
185 D A -2.1325
186 Y A -1.3185
187 L A 0.0000
188 V A 0.0000
189 I A 0.0000
190 E A 0.0000
191 V A 0.0000
192 S A 0.0000
193 E A 0.0000
194 V A 0.0000
195 Q A -0.5671
196 G A -0.3308
197 W A 0.4902
198 L A 1.0764
199 G A -0.2658
200 N A -1.0971
201 L A -0.8515
202 M A 0.0000
203 K A -2.0741
204 H A -1.3132
205 H A 0.0000
206 A A 0.0000
207 Y A -0.0778
208 L A 0.1251
209 M A 0.0000
210 V A 0.0000
211 S A -0.6608
212 A A 0.0000
213 V A 0.0000
214 K A -2.3501
215 P A 0.0000
216 S A -0.9688
217 V A 0.0000
218 G A 0.0000
219 V A 0.0000
220 I A 0.0000
221 T A 0.0000
222 N A -0.6094
223 I A 0.0000
224 A A -0.3454
225 M A -0.3000
226 D A 0.0000
227 H A -0.6626
228 I A -0.8158
229 G A -1.2546
230 L A -0.6233
231 V A 0.0000
232 N A -1.7643
233 S A -1.2616
234 I A -0.7994
235 D A -2.3430
236 E A -2.1153
237 V A 0.0000
238 F A -1.5231
239 D A -2.6211
240 E A 0.0000
241 I A 0.0000
242 N A -1.6674
243 Q A -1.1403
244 V A 0.0000
245 P A 0.0000
246 N A -2.0035
247 A A -1.1895
248 I A 0.0000
249 G A -2.2109
250 D A -2.7236
251 G A -1.6239
252 V A -0.5902
253 T A 0.0000
254 V A 0.0000
255 L A 0.0000
256 N A 0.0000
257 Y A -0.4182
258 D A -1.6658
259 D A -1.6004
260 D A -2.2616
261 L A -1.3828
262 V A 0.0000
263 M A -1.0920
264 K A -1.9198
265 L A 0.0000
266 T A -1.1878
267 P A -1.7759
268 K A -2.5798
269 H A -1.6865
270 P A -0.8040
271 F A 0.0000
272 L A 0.0000
273 C A 0.0000
274 S A 0.0000
275 M A -1.4794
276 N A -2.5799
277 N A -2.5964
278 M A 0.0000
279 D A -2.6614
280 S A -2.1439
281 K A -2.4359
282 N A -1.8283
283 P A -1.2975
284 N A -1.2714
285 V A 0.0000
286 Y A -1.3011
287 Y A -1.7749
288 D A -3.0720
289 N A -2.8044
290 G A 0.0000
291 I A 0.0000
292 F A -1.9944
293 Y A -1.4370
294 E A -2.5998
295 G A -2.3732
296 K A -2.7215
297 R A -2.3341
298 I A -1.1535
299 L A 0.0000
300 E A -2.1862
301 N A -2.2901
302 K A -2.5433
303 D A -1.9754
304 L A 0.0000
305 P A -1.0269
306 F A -0.5457
307 T A -0.6779
308 S A -0.6298
309 H A -0.8815
310 H A -0.6854
311 F A 0.0000
312 I A 0.0000
313 Q A -0.5038
314 N A 0.0000
315 I A 0.0000
316 L A 0.0000
317 S A 0.0000
318 A A 0.0000
319 V A 0.0000
320 A A 0.0000
321 A A 0.0000
322 C A 0.0000
323 I A 0.0000
324 S A -0.3806
325 L A 0.0000
326 N A -1.5944
327 M A -1.7362
328 D A -2.6983
329 I A -1.9189
330 E A -3.0063
331 D A -3.0338
332 I A 0.0000
333 V A -2.1193
334 E A -3.1052
335 G A 0.0000
336 V A 0.0000
337 K A -2.2248
338 S A -1.7553
339 Y A 0.0000
340 R A -2.2008
341 P A -1.3615
342 L A 0.0000
343 N A -2.4742
344 R A 0.0000
345 R A -0.9848
346 F A 0.0000
347 S A -1.4992
348 K A -2.1748
349 L A -1.3930
350 H A -1.8499
351 E A -2.8317
352 N A -2.7034
353 P A 0.0000
354 L A -1.5734
355 I A 0.0000
356 V A 0.0000
357 D A 0.0000
358 D A -0.7826
359 F A -0.4056
360 A A 0.0000
361 H A -0.5402
362 N A 0.0000
363 P A -1.2948
364 D A -2.0275
365 G A -1.2927
366 I A 0.0000
367 K A -1.9272
368 A A -1.1318
369 T A 0.0000
370 I A 0.0000
371 A A -0.6835
372 E A 0.0000
373 T A 0.0000
374 R A -0.8157
375 K A -1.2447
376 L A 0.3373
377 L A -0.7530
378 A A -1.3261
379 E A -2.5411
380 N A -2.5394
381 Q A -1.9669
382 T A -1.9989
383 L A 0.0000
384 Y A 0.0000
385 I A 0.0000
386 V A 0.0000
387 C A 0.0000
388 S A 0.0000
389 I A 0.0000
390 R A -0.7151
391 G A 0.0000
392 S A -0.9159
393 R A -1.3754
394 G A -1.8275
395 V A -2.0405
396 E A -2.0799
397 I A 0.0000
398 N A 0.0000
399 K A -1.6974
400 L A -0.8012
401 N A 0.0000
402 V A 0.0000
403 E A -2.0829
404 A A 0.0000
405 L A 0.0000
406 A A -2.1539
407 E A -2.6234
408 S A -1.5221
409 M A -1.9726
410 D A -2.7739
411 D A -3.0413
412 N A -3.0677
413 T A -2.3088
414 K A -2.5014
415 L A 0.0000
416 V A 0.0000
417 L A 0.0000
418 S A 0.0000
419 S A 0.0000
420 S A 0.0000
421 N A -1.1335
422 D A -1.3991
423 V A -0.4861
424 V A -0.5920
425 D A -1.1780
426 H A -0.5485
427 L A 0.7363
428 N A -0.0621
429 F A 0.0214
430 V A 0.0000
431 E A -3.4054
432 D A -3.9458
433 E A -3.8715
434 E A 0.0000
435 R A -2.9344
436 E A -3.6446
437 I A 0.0000
438 F A 0.0000
439 F A -2.0761
440 E A -2.9969
441 V A 0.0000
442 L A 0.0000
443 N A -3.3599
444 Q A -3.1219
445 N A -3.5872
446 N A -3.1565
447 I A -2.5780
448 D A -2.6642
449 Y A -1.5219
450 N A -1.3493
451 Y A -0.4005
452 F A -0.8614
453 D A -1.7142
454 N A -1.4397
455 L A 0.0000
456 C A -0.9109
457 D A -1.3411
458 C A 0.0000
459 L A 0.0000
460 K A -1.4720
461 D A -1.8183
462 T A 0.0000
463 Y A -1.0307
464 K A -2.0093
465 C A -0.7496
466 A A -1.5225
467 D A -2.4464
468 A A -2.2430
469 N A -2.5193
470 D A 0.0000
471 I A 0.0000
472 I A 0.0000
473 L A 0.0000
474 L A 0.0000
475 I A 0.0000
476 G A 0.0000
477 A A 0.0000
478 Q A -0.8405
479 G A 0.0000
480 M A 0.0000
481 D A -1.9859
482 P A -1.0529
483 A A 0.0000
484 E A -1.9052
485 G A -1.5589
486 L A -1.0786
487 L A 0.0000
488 E A -2.6141
489 N A -2.6919
490 I A -1.7892
491 L A -1.6448
492 R A -3.0918
493 K A -2.7952
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7368 2.0014 View CSV PDB
4.5 -0.8323 1.991 View CSV PDB
5.0 -0.9454 1.9794 View CSV PDB
5.5 -1.0587 1.9674 View CSV PDB
6.0 -1.1546 1.9552 View CSV PDB
6.5 -1.221 1.943 View CSV PDB
7.0 -1.2581 1.9379 View CSV PDB
7.5 -1.2744 1.9379 View CSV PDB
8.0 -1.2768 1.9379 View CSV PDB
8.5 -1.2656 1.9379 View CSV PDB
9.0 -1.2373 1.9379 View CSV PDB