Project name: f45084f28ba5227 [mutate: YA335A]

Status: done

Started: 2026-06-02 17:42:05
Chain sequence(s) A: GAVVYSSGSLYFQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Mutated residues YA335A
Energy difference between WT (input) and mutated protein (by FoldX) 0.670208 kcal/mol
Downloads Download all the data
Simulation log 
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:06)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/f45084f28ba5227/tmp/folded.pdb                (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues
Minimal score value
-0.1516
Maximal score value
3.6475
Average score
1.7732
Total score value
21.2784
Download the table (csv)

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
326 G A 0.0001
327 A A 1.7189
328 V A 3.0373
329 V A 3.6475
330 Y A 2.5060
331 S A 0.7523
332 G A 0.4678
333 S A 1.6250
334 L A 3.0894
335 A A 2.4195 mutated: YA335A
336 F A 2.1662
337 Q A -0.1516
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 2.4606 5.1092 View CSV PDB
4.5 2.4606 5.1092 View CSV PDB
5.0 2.4606 5.1092 View CSV PDB
5.5 2.4606 5.1092 View CSV PDB
6.0 2.4606 5.1092 View CSV PDB
6.5 2.4606 5.1092 View CSV PDB
7.0 2.4606 5.1092 View CSV PDB
7.5 2.4606 5.1092 View CSV PDB
8.0 2.4604 5.1092 View CSV PDB
8.5 2.4601 5.1092 View CSV PDB
9.0 2.4589 5.1092 View CSV PDB