| Chain sequence(s) |
A: MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage |
A: MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFN KFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRRERPY (Red indicates removed residues) |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] PDB: Running AlphaCutter (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:38)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:52)
[INFO] Main: Simulation completed successfully. (00:02:53)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 264 | K | A | -0.9260 | |
| 265 | F | A | 0.7787 | |
| 266 | G | A | -0.4541 | |
| 267 | G | A | -1.2161 | |
| 268 | P | A | -2.1152 | |
| 269 | R | A | -3.4461 | |
| 270 | D | A | -3.7801 | |
| 271 | Q | A | -3.6246 | |
| 272 | G | A | -2.7088 | |
| 273 | S | A | -2.6016 | |
| 274 | R | A | -3.6267 | |
| 275 | H | A | -3.3114 | |
| 276 | D | A | -3.7683 | |
| 277 | S | A | -3.4776 | |
| 278 | E | A | -3.6059 | |
| 279 | Q | A | -3.2678 | |
| 280 | D | A | -3.5005 | |
| 281 | N | A | -2.4911 | |
| 282 | S | A | -2.1809 | |
| 283 | D | A | -2.8174 | |
| 284 | N | A | -2.1470 | |
| 285 | N | A | -2.0901 | |
| 286 | T | A | 0.0000 | |
| 287 | I | A | 0.0000 | |
| 288 | F | A | -0.3682 | |
| 289 | V | A | 0.0000 | |
| 290 | Q | A | -1.7839 | |
| 291 | G | A | -2.1366 | |
| 292 | L | A | 0.0000 | |
| 293 | G | A | -2.2673 | |
| 294 | E | A | -3.2587 | |
| 295 | N | A | -2.5437 | |
| 296 | V | A | 0.0000 | |
| 297 | T | A | -1.0764 | |
| 298 | I | A | -1.0024 | |
| 299 | E | A | -2.2809 | |
| 300 | S | A | -1.5373 | |
| 301 | V | A | 0.0000 | |
| 302 | A | A | -1.9285 | |
| 303 | D | A | -2.9067 | |
| 304 | Y | A | -1.5952 | |
| 305 | F | A | 0.0000 | |
| 306 | K | A | -2.0963 | |
| 307 | Q | A | -1.7402 | |
| 308 | I | A | -0.1163 | |
| 309 | G | A | -0.5444 | |
| 310 | I | A | 0.3151 | |
| 311 | I | A | 0.0000 | |
| 312 | K | A | -1.6822 | |
| 313 | T | A | -1.5626 | |
| 314 | N | A | -2.1983 | |
| 315 | K | A | -3.0232 | |
| 316 | K | A | -2.9331 | |
| 317 | T | A | -2.0003 | |
| 318 | G | A | -2.1298 | |
| 319 | Q | A | -2.2522 | |
| 320 | P | A | -1.3016 | |
| 321 | M | A | -0.8674 | |
| 322 | I | A | 0.0000 | |
| 323 | N | A | -0.8239 | |
| 324 | L | A | -0.3813 | |
| 325 | Y | A | -0.9932 | |
| 326 | T | A | -2.3168 | |
| 327 | D | A | -3.0245 | |
| 328 | R | A | -3.5665 | |
| 329 | E | A | -3.3031 | |
| 330 | T | A | -2.5561 | |
| 331 | G | A | -2.7683 | |
| 332 | K | A | -3.5920 | |
| 333 | L | A | -2.6559 | |
| 334 | K | A | -3.0977 | |
| 335 | G | A | 0.0000 | |
| 336 | E | A | -1.4088 | |
| 337 | A | A | 0.0000 | |
| 338 | T | A | -0.2292 | |
| 339 | V | A | 0.0000 | |
| 340 | S | A | -0.7308 | |
| 341 | F | A | 0.0000 | |
| 342 | D | A | -2.3992 | |
| 343 | D | A | -2.9002 | |
| 344 | P | A | -2.4956 | |
| 345 | P | A | -1.7772 | |
| 346 | S | A | -1.4120 | |
| 347 | A | A | 0.0000 | |
| 348 | K | A | -1.7907 | |
| 349 | A | A | -0.6783 | |
| 350 | A | A | 0.0000 | |
| 351 | I | A | -1.1330 | |
| 352 | D | A | -1.7159 | |
| 353 | W | A | -0.1824 | |
| 354 | F | A | 0.0000 | |
| 355 | D | A | -2.7251 | |
| 356 | G | A | -2.5792 | |
| 357 | K | A | -2.8118 | |
| 358 | E | A | -3.2659 | |
| 359 | F | A | -1.7261 | |
| 360 | S | A | -1.4425 | |
| 361 | G | A | -1.6088 | |
| 362 | N | A | -2.1641 | |
| 363 | P | A | -2.5592 | |
| 364 | I | A | 0.0000 | |
| 365 | K | A | -3.0344 | |
| 366 | V | A | 0.0000 | |
| 367 | S | A | -0.9364 | |
| 368 | F | A | -0.4398 | |
| 369 | A | A | 0.0000 | |
| 370 | T | A | -1.0786 | |
| 371 | R | A | -1.8854 | |
| 372 | R | A | -2.7892 | |
| 373 | A | A | -2.1468 | |
| 374 | D | A | -2.6836 | |
| 375 | F | A | -1.0057 | |
| 376 | N | A | -2.4396 | |
| 377 | R | A | -3.0443 | |
| 378 | G | A | -1.9445 | |
| 379 | G | A | -1.4050 | |
| 380 | G | A | -1.0934 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine