| Chain sequence(s) |
A: MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 0 | M | A | 1.4597 | |
| 1 | I | A | 1.1521 | |
| 2 | Q | A | -0.2904 | |
| 3 | R | A | -0.7505 | |
| 4 | T | A | -0.6876 | |
| 5 | P | A | 0.0000 | |
| 6 | K | A | -1.7336 | |
| 7 | I | A | -0.6628 | |
| 8 | Q | A | -0.6878 | |
| 9 | V | A | -0.4348 | |
| 10 | Y | A | -0.9726 | |
| 11 | S | A | -1.6397 | |
| 12 | R | A | -2.4489 | |
| 13 | H | A | -3.1474 | |
| 14 | P | A | -2.3847 | |
| 15 | A | A | -2.1627 | |
| 16 | E | A | -2.9129 | |
| 17 | N | A | -3.1369 | |
| 18 | G | A | -3.0342 | |
| 19 | K | A | -2.8175 | |
| 20 | S | A | -2.5043 | |
| 21 | N | A | -2.1216 | |
| 22 | F | A | -1.3080 | |
| 23 | L | A | 0.0000 | |
| 24 | N | A | 0.0000 | |
| 25 | C | A | 0.0000 | |
| 26 | Y | A | 0.1473 | |
| 27 | V | A | 0.0000 | |
| 28 | S | A | -0.0547 | |
| 29 | G | A | -0.3958 | |
| 30 | F | A | 0.0000 | |
| 31 | H | A | -0.2151 | |
| 32 | P | A | -0.4371 | |
| 33 | S | A | -0.4494 | |
| 34 | D | A | -1.7080 | |
| 35 | I | A | -1.0483 | |
| 36 | E | A | -1.8967 | |
| 37 | V | A | -0.8479 | |
| 38 | D | A | 0.0000 | |
| 39 | L | A | 0.0000 | |
| 40 | L | A | 0.0000 | |
| 41 | K | A | -3.1769 | |
| 42 | N | A | -3.2784 | |
| 43 | G | A | -2.6549 | |
| 44 | E | A | -3.7755 | |
| 45 | R | A | -3.5770 | |
| 46 | I | A | -2.6569 | |
| 47 | E | A | -3.2487 | |
| 48 | K | A | -3.0282 | |
| 49 | V | A | -1.9337 | |
| 50 | E | A | -1.9290 | |
| 51 | H | A | -1.3883 | |
| 52 | S | A | -0.7473 | |
| 53 | D | A | -0.8909 | |
| 54 | L | A | 1.1874 | |
| 55 | S | A | 0.9515 | |
| 56 | F | A | 1.4670 | |
| 57 | S | A | -0.3647 | |
| 58 | K | A | -1.8821 | |
| 59 | D | A | -1.8126 | |
| 60 | W | A | -0.2303 | |
| 61 | S | A | 0.0000 | |
| 62 | F | A | 0.6982 | |
| 63 | Y | A | 0.9939 | |
| 64 | L | A | 0.0000 | |
| 65 | L | A | 0.2891 | |
| 66 | Y | A | 0.1022 | |
| 67 | Y | A | -0.6721 | |
| 68 | T | A | 0.0000 | |
| 69 | E | A | -1.9937 | |
| 70 | F | A | 0.0000 | |
| 71 | T | A | -0.5894 | |
| 72 | P | A | -1.4684 | |
| 73 | T | A | -1.9115 | |
| 74 | E | A | -3.1326 | |
| 75 | K | A | -3.2588 | |
| 76 | D | A | -3.0680 | |
| 77 | E | A | -4.1400 | |
| 78 | Y | A | 0.0000 | |
| 79 | A | A | 0.0000 | |
| 80 | C | A | 0.0000 | |
| 81 | R | A | -0.7844 | |
| 82 | V | A | 0.0000 | |
| 83 | N | A | -1.1027 | |
| 84 | H | A | 0.0000 | |
| 85 | V | A | 0.8663 | |
| 86 | T | A | 0.3208 | |
| 87 | L | A | -0.1542 | |
| 88 | S | A | -0.5697 | |
| 89 | Q | A | -1.2660 | |
| 90 | P | A | -1.0832 | |
| 91 | K | A | -0.8495 | |
| 92 | I | A | 0.5724 | |
| 93 | V | A | -0.2535 | |
| 94 | K | A | -2.2163 | |
| 95 | W | A | 0.0000 | |
| 96 | D | A | -3.2054 | |
| 97 | R | A | -3.1177 | |
| 98 | D | A | -2.6275 |