| Chain sequence(s) |
A: DVQLRESGGGKVQAGGSLRLSCTVSTSRFSGVGRMAWHRQAPGKQREKVAEITRAGSRTYADAVKGRFTISRDNAKNTVYLQMDRLKPEDTAVYWCVRARWQSGTPRTPGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | HR38A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.875011 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:44)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:56)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -1.9040 | |
| 2 | V | A | -1.6471 | |
| 3 | Q | A | -2.0165 | |
| 4 | L | A | -1.8991 | |
| 5 | R | A | -2.2655 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1894 | |
| 8 | G | A | -1.3288 | |
| 9 | G | A | -1.4983 | |
| 10 | G | A | -1.7009 | |
| 11 | K | A | -2.3056 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -2.1162 | |
| 14 | A | A | -2.0936 | |
| 15 | G | A | -1.8658 | |
| 16 | G | A | -1.7128 | |
| 17 | S | A | -1.7997 | |
| 18 | L | A | -1.8247 | |
| 19 | R | A | -2.2654 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.9834 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.2548 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.3606 | |
| 26 | T | A | -1.3050 | |
| 27 | S | A | -1.2283 | |
| 28 | R | A | -2.2675 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.7176 | |
| 31 | G | A | -1.7542 | |
| 32 | V | A | 0.0000 | |
| 33 | G | A | -2.0531 | |
| 34 | R | A | -2.6472 | |
| 35 | M | A | 0.0000 | |
| 36 | A | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | R | A | -1.0108 | mutated: HR38A |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -2.0782 | |
| 41 | A | A | -1.8490 | |
| 42 | P | A | -1.3266 | |
| 43 | G | A | -1.8353 | |
| 44 | K | A | -3.0241 | |
| 45 | Q | A | -2.8619 | |
| 46 | R | A | -2.4945 | |
| 47 | E | A | -2.3546 | |
| 48 | K | A | -1.3872 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | E | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | T | A | -2.1408 | |
| 54 | R | A | -2.7822 | |
| 55 | A | A | -1.4694 | |
| 56 | G | A | -1.6467 | |
| 57 | S | A | -1.5721 | |
| 58 | R | A | -1.9917 | |
| 59 | T | A | -1.2584 | |
| 60 | Y | A | -1.2869 | |
| 61 | A | A | -1.5638 | |
| 62 | D | A | -2.4012 | |
| 63 | A | A | -1.5961 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5775 | |
| 66 | G | A | -1.9992 | |
| 67 | R | A | -2.1268 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.1745 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.8512 | |
| 72 | R | A | -1.6143 | |
| 73 | D | A | -1.6962 | |
| 74 | N | A | -2.3607 | |
| 75 | A | A | -1.5049 | |
| 76 | K | A | -2.2898 | |
| 77 | N | A | -1.9682 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7329 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5575 | |
| 83 | M | A | 0.0000 | |
| 84 | D | A | -2.5690 | |
| 85 | R | A | -2.9235 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.7141 | |
| 88 | P | A | -1.8492 | |
| 89 | E | A | -2.3016 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.3506 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4548 | |
| 94 | Y | A | 0.0000 | |
| 95 | W | A | -0.7701 | |
| 96 | C | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | R | A | -2.2346 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -2.6300 | |
| 101 | W | A | -1.5862 | |
| 102 | Q | A | -1.8212 | |
| 103 | S | A | -1.0193 | |
| 104 | G | A | -0.8223 | |
| 105 | T | A | -0.8757 | |
| 106 | P | A | -1.0613 | |
| 107 | R | A | -2.2455 | |
| 108 | T | A | 0.0000 | |
| 109 | P | A | -1.0133 | |
| 110 | G | A | -1.0190 | |
| 111 | T | A | -0.9647 | |
| 112 | Q | A | -1.5581 | |
| 113 | V | A | 0.0000 | |
| 114 | T | A | -1.5960 | |
| 115 | V | A | 0.0000 | |
| 116 | S | A | -1.4383 | |
| 117 | S | A | -1.0416 |