CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Jan-11 05:36:15 UTC
Project NameNIRANJANA
SequenceSGIHVALVTG GNKGIGLAIV RDLCRLFSGD VVLTARDVTR GQAAVQQLQA EGLSPRFHQL DIDDLQSIRA LRDFLRKEYG GLDVLVNNAG IAFKVADPTP FHIQAEVTMK TNFFGTRDVC TELLPLIKPQ GRVVNVSSIM SVRALKSCSP ELQQKFRSET ITEEELVGLM NKFVEDTKKG VHQKEGWPSS AYGVTKIGVT VLSRIHARKL SEQRKGDKIL LNACCPGWVR TDMAGPKATK SPEEGAETPV YLALLPPDAE GPHGQFVSEK RVEQW
Secondary structure

CCCCEEEECC CCCHHHHHHH HHHHHHCCCE EEEEECCHHH HHHHHHHHHH CCCCCEEEEC CCCCHHHHHH HHHHHHHHHC CEEEEEECCC CCCCCCCCCC HHHHHHHHHH HHCHHHHHHH HHHCCCEEEE EEEEEECCCH HHHHHHCCCH HHHHHHHCCC CCHHHHHHHH HHHHHHHHHC CCCCCCCCCC HHHHHHHHHH HHHHHHHHHH HHHCCCCCCE EEEEECCCCC CCCCCCCCCC CHHHHCHHHH HHHCCCCCCC CCCCCEEECC EEECC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Jan-11 09:31 UTC
Project NameNIRANJANA
Clustering data
Cluster #123456789101112
Cluster density253.5180.8146.2139.5136.1133.3110.699.697.280.878.877.1
Cluster size33523019118616717914912911910511892
Average cluster RMSD1.31.31.31.31.21.31.31.31.21.31.51.2

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 3.02 2.86 3.26 2.71 2.99 2.91 2.70 2.66 3.22 2.86 3.14 3.51
GDT_TS 0.64 0.66 0.65 0.67 0.63 0.65 0.65 0.69 0.65 0.68 0.65 0.62

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 2.26 2.36 2.00 2.01 2.32 2.64 2.28 2.44 2.49 2.56 2.92
2 2.26 0.00 2.35 1.90 2.29 2.39 2.40 2.23 2.62 2.33 2.35 2.70
3 2.36 2.35 0.00 2.35 2.03 2.02 2.92 2.70 1.85 2.70 2.19 2.04
4 2.00 1.90 2.35 0.00 2.06 2.05 2.26 2.04 2.30 2.35 2.42 2.55
5 2.01 2.29 2.03 2.06 0.00 2.17 2.53 2.23 2.15 2.19 2.31 2.46
6 2.32 2.39 2.02 2.05 2.17 0.00 2.52 2.23 2.00 2.57 1.98 1.93
7 2.64 2.40 2.92 2.26 2.53 2.52 0.00 2.23 2.84 2.01 2.51 2.97
8 2.28 2.23 2.70 2.04 2.23 2.23 2.23 0.00 2.52 2.13 2.38 2.72
9 2.44 2.62 1.85 2.30 2.15 2.00 2.84 2.52 0.00 2.68 2.50 1.88
10 2.49 2.33 2.70 2.35 2.19 2.57 2.01 2.13 2.68 0.00 2.37 2.97
11 2.56 2.35 2.19 2.42 2.31 1.98 2.51 2.38 2.50 2.37 0.00 2.27
12 2.92 2.70 2.04 2.55 2.46 1.93 2.97 2.72 1.88 2.97 2.27 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.73 0.69 0.75 0.74 0.71 0.69 0.74 0.68 0.70 0.71 0.65
2 0.73 1.00 0.74 0.80 0.73 0.72 0.70 0.73 0.72 0.71 0.71 0.70
3 0.69 0.74 1.00 0.72 0.74 0.79 0.66 0.68 0.80 0.67 0.76 0.82
4 0.75 0.80 0.72 1.00 0.80 0.75 0.73 0.79 0.74 0.74 0.73 0.69
5 0.74 0.73 0.74 0.80 1.00 0.76 0.69 0.76 0.77 0.73 0.76 0.73
6 0.71 0.72 0.79 0.75 0.76 1.00 0.68 0.72 0.78 0.70 0.85 0.79
7 0.69 0.70 0.66 0.73 0.69 0.68 1.00 0.72 0.69 0.77 0.67 0.65
8 0.74 0.73 0.68 0.79 0.76 0.72 0.72 1.00 0.71 0.77 0.72 0.66
9 0.68 0.72 0.80 0.74 0.77 0.78 0.69 0.71 1.00 0.69 0.75 0.77
10 0.70 0.71 0.67 0.74 0.73 0.70 0.77 0.77 0.69 1.00 0.69 0.65
11 0.71 0.71 0.76 0.73 0.76 0.85 0.67 0.72 0.75 0.69 1.00 0.76
12 0.65 0.70 0.82 0.69 0.73 0.79 0.65 0.66 0.77 0.65 0.76 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013