CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Mar-26 00:38:25 UTC
Project NameTetherin_Minimized_No_substrate
SequenceSEACRDGLRA VMECRNVTHL LQQELTEAQK GFQDVEAQAA TCNHTVMALM ASLDAEKAQG QKKVEELEGE ITTLNHKLQD ASAEVERLRR ENQVLSVRIA DKKYYP
Secondary structure

CHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHHHHHHHHH HHCCCC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Mar-26 05:11 UTC
Project NameTetherin_Minimized_No_substrate
Clustering data
Cluster #123456789101112
Cluster density212.3143.5132.8100.395.292.289.187.583.977.658.455.6
Cluster size35821519218018710811815912314711895
Average cluster RMSD1.71.51.41.82.01.21.31.81.51.92.01.7

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 3.54 4.52 4.59 3.74 4.76 5.94 4.83 4.49 5.07 4.08 4.43 4.52
GDT_TS 0.59 0.61 0.54 0.50 0.56 0.45 0.52 0.54 0.54 0.59 0.57 0.45

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 2.60 2.26 1.05 2.59 3.57 2.75 2.62 3.10 1.80 2.54 2.65
2 2.60 0.00 1.98 2.42 2.21 2.84 2.15 1.73 1.96 3.15 2.66 3.45
3 2.26 1.98 0.00 2.06 2.13 1.86 1.32 2.30 2.26 2.87 2.86 3.75
4 1.05 2.42 2.06 0.00 2.38 3.24 2.76 2.35 3.03 1.78 2.56 2.62
5 2.59 2.21 2.13 2.38 0.00 2.66 2.25 1.78 2.70 2.38 1.86 3.71
6 3.57 2.84 1.86 3.24 2.66 0.00 1.97 3.03 2.35 3.67 3.39 4.83
7 2.75 2.15 1.32 2.76 2.25 1.97 0.00 2.49 2.27 3.19 2.76 4.14
8 2.62 1.73 2.30 2.35 1.78 3.03 2.49 0.00 2.67 2.77 2.22 3.39
9 3.10 1.96 2.26 3.03 2.70 2.35 2.27 2.67 0.00 3.24 2.77 4.45
10 1.80 3.15 2.87 1.78 2.38 3.67 3.19 2.77 3.24 0.00 2.10 3.34
11 2.54 2.66 2.86 2.56 1.86 3.39 2.76 2.22 2.77 2.10 0.00 3.78
12 2.65 3.45 3.75 2.62 3.71 4.83 4.14 3.39 4.45 3.34 3.78 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.78 0.84 0.92 0.78 0.69 0.79 0.70 0.68 0.93 0.80 0.71
2 0.78 1.00 0.77 0.74 0.85 0.67 0.73 0.82 0.79 0.75 0.81 0.60
3 0.84 0.77 1.00 0.79 0.81 0.79 0.89 0.73 0.78 0.79 0.78 0.59
4 0.92 0.74 0.79 1.00 0.73 0.68 0.72 0.73 0.66 0.90 0.77 0.72
5 0.78 0.85 0.81 0.73 1.00 0.71 0.78 0.83 0.73 0.76 0.89 0.60
6 0.69 0.67 0.79 0.68 0.71 1.00 0.78 0.66 0.75 0.66 0.67 0.52
7 0.79 0.73 0.89 0.72 0.78 0.78 1.00 0.70 0.74 0.74 0.76 0.57
8 0.70 0.82 0.73 0.73 0.83 0.66 0.70 1.00 0.71 0.73 0.86 0.62
9 0.68 0.79 0.78 0.66 0.73 0.75 0.74 0.71 1.00 0.69 0.70 0.53
10 0.93 0.75 0.79 0.90 0.76 0.66 0.74 0.73 0.69 1.00 0.80 0.69
11 0.80 0.81 0.78 0.77 0.89 0.67 0.76 0.86 0.70 0.80 1.00 0.59
12 0.71 0.60 0.59 0.72 0.60 0.52 0.57 0.62 0.53 0.69 0.59 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013