CABS-flex: server for fast simulation of protein structure fluctuations

Download models Download C^α trajectory

Status: Done started: 2018-Apr-28 09:05:51 UTC

Project Name	Bh_Alp
Sequence	SEEKKEYLIV VEPEEVSAQS VEESYDVDVI HEFEEIPVIH AELTKKELKK LKKDPNVKAI EKNAEVTISQ TVPWGISFIN TQQAHNRGIF GNGARVAVLD TGIASHPDLR IAGGASFISS EPSYHDNNGH GTHVAGTIAA LNNSIGVLGV APSADLYAVK VLDRNGSGSL ASVAQGIEWA INNNMHIINM SLGSTSGSST LELAVNRANN AGILLVGAAG NTGRQGVNYP ARYSGVMAVA AVDQNGQRAS FSTYGPEIEI SAPGVNVNST YTGNRYVSLS GTSMATPHVA GVAALVKSRY PSYTNNQIRQ RINQTATYLG SPSLYGNGLV HAGRATQ
Secondary structure	CCCEEEEEEE ECCCCCCHHH HHHHCCCEEE EEECCCCEEE EEEEHHHHHC CCCCCCEEEE EECCEEEECC CCCCCCCCCC HHHHHHCCCC CCCCEEEEEE CCCCCCCCCC CCEEEECCCC CCCCCCCCCH HHHHHHHHHC CCCCCCCCCC CCCCEEEEEE CCCCCCEEEH HHHHHHHHHH HHCCCCEEEE CEECCCCCHH HHHHHHHHHH CCCEEEEECC CCCCCCCCCC CCCCCCEEEE CCCCCCCCCC CCCCCCCCCE ECCCCCEEEE ECCCEEEEEC CHHHHHHHHH HHHHHHHHHC CCCCHHHHHH HHHHHCCCCC CCCCCCEEEC CHHHHHC
Movie from predicted structures	To download the movie, right click on the desired file format:
Estimated finish time	2018-Apr-28 14:09 UTC

Project Name	Bh_Alp

Multimodel

Multimodel [PDB] Multimodel with superimposed input structure [PDB] Fluctuation data [TXT] Fluctuation plot [EPS]

Model 001

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 002

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 003

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 004

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 005

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 006

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 007

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 008

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 009

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 010

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 011

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Model 012

Model [PDB] Model with superimposed input structure [PDB] RMSD data [TXT] RMSD plot [EPS]

Project Name	Bh_Alp

Clustering data

Cluster #	1	2	3	4	5	6	7	8	9	10	11	12
Cluster density	241.2	158.9	158.7	144.1	138.5	132.8	131.3	112.2	107.5	91.0	88.1	80.9
Cluster size	310	199	192	182	178	169	162	135	137	126	115	95
Average cluster RMSD	1.3	1.3	1.2	1.3	1.3	1.3	1.2	1.2	1.3	1.4	1.3	1.2

Read about clustering method.

C^α RMSD & GDT_TS to the input structure

#	1	2	3	4	5	6	7	8	9	10	11	12
RMSD	2.38	2.45	2.46	2.56	2.29	2.54	2.58	2.55	2.80	2.44	2.85	2.83
GDT_TS	0.71	0.68	0.68	0.69	0.70	0.68	0.68	0.67	0.65	0.71	0.67	0.66

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

C^α RMSD between predicted models

#	1	2	3	4	5	6	7	8	9	10	11	12
1	0.00	2.01	1.98	2.19	2.12	2.06	2.16	1.94	2.31	2.01	2.63	2.41
2	2.01	0.00	2.18	2.32	2.06	2.16	2.28	2.06	2.27	1.94	2.51	2.39
3	1.98	2.18	0.00	1.94	1.99	2.06	1.88	2.04	2.06	1.97	2.20	2.21
4	2.19	2.32	1.94	0.00	2.13	2.49	2.11	2.25	2.05	2.16	2.15	2.43
5	2.12	2.06	1.99	2.13	0.00	2.31	2.01	2.19	2.24	2.12	2.45	2.27
6	2.06	2.16	2.06	2.49	2.31	0.00	2.24	2.08	2.48	2.04	2.70	2.41
7	2.16	2.28	1.88	2.11	2.01	2.24	0.00	2.22	2.10	2.26	2.45	2.22
8	1.94	2.06	2.04	2.25	2.19	2.08	2.22	0.00	2.44	2.02	2.48	2.32
9	2.31	2.27	2.06	2.05	2.24	2.48	2.10	2.44	0.00	2.30	2.31	2.41
10	2.01	1.94	1.97	2.16	2.12	2.04	2.26	2.02	2.30	0.00	2.46	2.29
11	2.63	2.51	2.20	2.15	2.45	2.70	2.45	2.48	2.31	2.46	0.00	2.49
12	2.41	2.39	2.21	2.43	2.27	2.41	2.22	2.32	2.41	2.29	2.49	0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

C^α GDT_TS between predicted models

#	1	2	3	4	5	6	7	8	9	10	11	12
1	1.00	0.75	0.74	0.70	0.73	0.73	0.73	0.75	0.73	0.76	0.69	0.72
2	0.75	1.00	0.71	0.69	0.73	0.73	0.71	0.74	0.73	0.78	0.69	0.71
3	0.74	0.71	1.00	0.75	0.74	0.75	0.75	0.75	0.74	0.75	0.72	0.72
4	0.70	0.69	0.75	1.00	0.71	0.70	0.72	0.72	0.73	0.75	0.75	0.71
5	0.73	0.73	0.74	0.71	1.00	0.71	0.75	0.70	0.71	0.74	0.70	0.72
6	0.73	0.73	0.75	0.70	0.71	1.00	0.72	0.75	0.72	0.75	0.67	0.72
7	0.73	0.71	0.75	0.72	0.75	0.72	1.00	0.73	0.73	0.73	0.71	0.74
8	0.75	0.74	0.75	0.72	0.70	0.75	0.73	1.00	0.71	0.75	0.69	0.72
9	0.73	0.73	0.74	0.73	0.71	0.72	0.73	0.71	1.00	0.73	0.73	0.72
10	0.76	0.78	0.75	0.75	0.74	0.75	0.73	0.75	0.73	1.00	0.72	0.71
11	0.69	0.69	0.72	0.75	0.70	0.67	0.71	0.69	0.73	0.72	1.00	0.70
12	0.72	0.71	0.72	0.71	0.72	0.72	0.74	0.72	0.72	0.71	0.70	1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013