CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Oct-03 06:56:36 UTC
Project Name
SequenceNAMADQLTEE QIAEFKEAFS LFDKDGDGTI TTKELGTVMR SLGQNPTEAE LQDMINEVDA DGNGTIDFPE FLTMMARKMK DTDSEEEIRE AFRVFDKDGN GYISAAELRH VMTNLGEKLT DEEVDEMIRE ADIDGDGQVN YEEFVQMMTA K
Secondary structure

CCCCCCCCHH HHHHHHHHHH HHCCCCCCEE CHHHHHHHHH HCCCCCCHHH HHHHHHHHCC CCCCCEEHHH HHHHHHHHHH HHHHHHHHHH HHHHHCCCCC CEECHHHHHH HHHHCCCCCC HHHHHHHHHH HCCCCCCCEE HHHHHHHHCC C

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Oct-03 11:35 UTC
Project Name
Clustering data
Cluster #123456789101112
Cluster density251.1198.3174.0143.2137.7117.7110.7102.184.574.154.849.5
Cluster size355266223204182151154141104956560
Average cluster RMSD1.41.31.31.41.31.31.41.41.21.31.21.2

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 6.98 6.79 5.22 6.84 5.96 5.22 6.71 5.99 5.61 4.85 4.61 4.79
GDT_TS 0.42 0.41 0.51 0.41 0.45 0.51 0.43 0.47 0.49 0.53 0.53 0.54

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 1.86 2.96 2.04 2.15 3.41 2.07 2.13 3.31 4.28 5.15 5.45
2 1.86 0.00 3.14 1.47 2.30 3.59 2.34 2.48 3.56 4.24 5.04 5.35
3 2.96 3.14 0.00 3.25 2.21 1.85 2.94 2.05 2.03 2.65 3.22 3.87
4 2.04 1.47 3.25 0.00 2.51 3.78 2.62 2.52 3.65 4.40 5.19 5.50
5 2.15 2.30 2.21 2.51 0.00 2.75 2.16 1.81 2.92 3.28 4.06 4.47
6 3.41 3.59 1.85 3.78 2.75 0.00 2.89 2.45 2.65 2.07 2.84 3.35
7 2.07 2.34 2.94 2.62 2.16 2.89 0.00 2.20 3.52 3.77 4.59 4.90
8 2.13 2.48 2.05 2.52 1.81 2.45 2.20 0.00 2.32 3.25 3.97 4.41
9 3.31 3.56 2.03 3.65 2.92 2.65 3.52 2.32 0.00 3.17 3.70 4.58
10 4.28 4.24 2.65 4.40 3.28 2.07 3.77 3.25 3.17 0.00 2.16 2.87
11 5.15 5.04 3.22 5.19 4.06 2.84 4.59 3.97 3.70 2.16 0.00 2.08
12 5.45 5.35 3.87 5.50 4.47 3.35 4.90 4.41 4.58 2.87 2.08 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.77 0.67 0.80 0.73 0.63 0.75 0.73 0.63 0.54 0.51 0.49
2 0.77 1.00 0.64 0.85 0.74 0.62 0.73 0.68 0.59 0.52 0.49 0.50
3 0.67 0.64 1.00 0.66 0.73 0.81 0.66 0.75 0.77 0.66 0.64 0.61
4 0.80 0.85 0.66 1.00 0.76 0.60 0.73 0.71 0.60 0.50 0.47 0.48
5 0.73 0.74 0.73 0.76 1.00 0.69 0.76 0.77 0.65 0.59 0.56 0.51
6 0.63 0.62 0.81 0.60 0.69 1.00 0.68 0.71 0.72 0.75 0.67 0.65
7 0.75 0.73 0.66 0.73 0.76 0.68 1.00 0.74 0.60 0.57 0.53 0.51
8 0.73 0.68 0.75 0.71 0.77 0.71 0.74 1.00 0.71 0.64 0.58 0.57
9 0.63 0.59 0.77 0.60 0.65 0.72 0.60 0.71 1.00 0.66 0.62 0.58
10 0.54 0.52 0.66 0.50 0.59 0.75 0.57 0.64 0.66 1.00 0.75 0.69
11 0.51 0.49 0.64 0.47 0.56 0.67 0.53 0.58 0.62 0.75 1.00 0.77
12 0.49 0.50 0.61 0.48 0.51 0.65 0.51 0.57 0.58 0.69 0.77 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013