CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Feb-26 12:43:28 UTC
Project NameJH_022518_HeV_XD_Nt
SequenceASKDVVRTMI RTHIKDRELR SELMDYLNRA ETDEEVQEVA NTVNDIIDGN I
Secondary structure

CCHHHHHHCC CCCCCCHHHH HHHHHHHCCC CCCCCHHHHH HHHHHHHHHH C

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Feb-26 16:09 UTC
Project NameJH_022518_HeV_XD_Nt
Clustering data
Cluster #123456789101112
Cluster density285.9251.4183.7142.6130.3128.6122.9108.594.184.683.269.4
Cluster size31028422215814015114914814110591101
Average cluster RMSD1.11.11.21.11.11.21.21.41.51.21.11.5

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 1.89 2.00 2.94 2.52 3.01 2.05 2.67 1.93 2.09 2.09 2.14 1.63
GDT_TS 0.80 0.81 0.69 0.72 0.66 0.78 0.72 0.80 0.79 0.76 0.77 0.82

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 1.33 2.02 1.63 2.38 1.32 2.29 1.75 0.92 1.15 1.81 1.37
2 1.33 0.00 1.99 1.29 1.90 1.05 1.69 1.21 1.26 1.32 1.14 1.26
3 2.02 1.99 0.00 1.72 3.08 1.59 3.09 2.27 1.91 2.04 2.63 2.51
4 1.63 1.29 1.72 0.00 2.40 1.56 2.34 1.82 1.43 1.23 1.69 1.96
5 2.38 1.90 3.08 2.40 0.00 2.38 1.79 2.38 2.08 2.33 2.25 2.18
6 1.32 1.05 1.59 1.56 2.38 0.00 2.14 1.23 1.44 1.54 1.70 1.51
7 2.29 1.69 3.09 2.34 1.79 2.14 0.00 1.71 2.10 2.32 1.55 1.83
8 1.75 1.21 2.27 1.82 2.38 1.23 1.71 0.00 1.80 1.92 1.28 1.32
9 0.92 1.26 1.91 1.43 2.08 1.44 2.10 1.80 0.00 0.96 1.86 1.30
10 1.15 1.32 2.04 1.23 2.33 1.54 2.32 1.92 0.96 0.00 1.78 1.50
11 1.81 1.14 2.63 1.69 2.25 1.70 1.55 1.28 1.86 1.78 0.00 1.57
12 1.37 1.26 2.51 1.96 2.18 1.51 1.83 1.32 1.30 1.50 1.57 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.92 0.78 0.85 0.78 0.89 0.76 0.83 0.93 0.89 0.83 0.85
2 0.92 1.00 0.75 0.87 0.82 0.90 0.81 0.87 0.92 0.91 0.89 0.89
3 0.78 0.75 1.00 0.80 0.68 0.83 0.67 0.75 0.79 0.79 0.69 0.71
4 0.85 0.87 0.80 1.00 0.79 0.84 0.72 0.79 0.89 0.94 0.82 0.77
5 0.78 0.82 0.68 0.79 1.00 0.77 0.77 0.75 0.79 0.79 0.75 0.78
6 0.89 0.90 0.83 0.84 0.77 1.00 0.76 0.88 0.86 0.90 0.81 0.85
7 0.76 0.81 0.67 0.72 0.77 0.76 1.00 0.82 0.82 0.76 0.80 0.85
8 0.83 0.87 0.75 0.79 0.75 0.88 0.82 1.00 0.79 0.77 0.89 0.91
9 0.93 0.92 0.79 0.89 0.79 0.86 0.82 0.79 1.00 0.93 0.81 0.88
10 0.89 0.91 0.79 0.94 0.79 0.90 0.76 0.77 0.93 1.00 0.85 0.85
11 0.83 0.89 0.69 0.82 0.75 0.81 0.80 0.89 0.81 0.85 1.00 0.87
12 0.85 0.89 0.71 0.77 0.78 0.85 0.85 0.91 0.88 0.85 0.87 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013