CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Jul-28 16:49:29 UTC
Project Name
SequenceAPPHALSEAA AKLLYGGIFC YAAYKIYANW PTYAAYHVYT THFAYAAYRV AAALRIYAAY ATYAALLPLA AYFVKWNFTA FAAYYVAFVE RLYAAYFVAY FRTPLAAYFM HVYTTHFGPG PGTFVKWNFT AFLVDKDGPG PGAPLMLYIS KMVPTADGPG PGNTDFVMYV ASVPSEGGPG PGTTFVKWNF TAFLVDKGPG PGCNGGLMLQ AFEWLLRGPG PGWLKGYFRL GVAMESMGPG PGLGTTFVKW NFTAFLVGPG PGAAYYIKAA ERIAAKGGPG PGASDAGYYS ALTMAIFGPG PGLVKYLIPQ ALQLHTEGPG PGLTKLFRYK SSRSESEGPG PGQDCKFVLV KAAAPAAGPG PGDILVKYLI PQALQLHGPG PGSDAGYYSA LTMAIFQ
Secondary structure

CCCHHHHHHH HHHHHCHHHH CCHHHHHCCC CCCCCCCCCC CCCCCCCCCC CCCHHHHHCC CCCCCCCCCC CCCCCCCCCC CHHHHHHHHC CHHHHHHCCC CCCHHHHHHC CHHHHHCCCC CCEEEECCEE EECCCCCCCC CCCCCCCCCC EEEEEEEEEC CCCEEEEEEE ECCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCHH HHHHHCCCCC CCHHHHHHHC HHHHHHCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCEECCCC CCCEECCCCC CCCCCEECCC CCCHHHHCCC CCCCCCCCCC CCCEECCCCC CCCCCCCCCC CCCCCCCCCC CCCCCHHHHH HHHHHHHCCC CCCHHHHHHH HHHHHHC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Jul-28 22:00 UTC
Project Name
Clustering data
Cluster #123456789101112
Cluster density152.8135.1133.5123.8123.1118.0108.092.385.680.960.960.3
Cluster size2452202172032001861611491301129186
Average cluster RMSD1.61.61.61.61.61.61.51.61.51.41.51.4

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 5.49 5.87 4.45 4.91 4.84 5.36 5.34 5.52 5.91 5.10 3.92 5.19
GDT_TS 0.42 0.45 0.44 0.43 0.44 0.45 0.43 0.42 0.41 0.43 0.52 0.41

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 3.54 4.20 3.55 4.20 2.89 2.66 3.34 3.64 3.50 4.00 3.80
2 3.54 0.00 4.98 4.28 5.10 3.10 3.70 3.39 3.46 4.49 4.77 4.56
3 4.20 4.98 0.00 3.87 3.55 4.45 4.21 4.45 4.97 3.75 3.19 3.83
4 3.55 4.28 3.87 0.00 2.98 3.79 3.07 4.04 4.47 2.82 3.98 3.04
5 4.20 5.10 3.55 2.98 0.00 4.50 3.89 4.57 5.06 2.85 4.17 3.06
6 2.89 3.10 4.45 3.79 4.50 0.00 3.18 3.33 3.49 3.93 4.11 4.08
7 2.66 3.70 4.21 3.07 3.89 3.18 0.00 3.52 3.86 3.33 3.97 3.35
8 3.34 3.39 4.45 4.04 4.57 3.33 3.52 0.00 3.23 4.01 4.07 4.24
9 3.64 3.46 4.97 4.47 5.06 3.49 3.86 3.23 0.00 4.47 4.33 4.48
10 3.50 4.49 3.75 2.82 2.85 3.93 3.33 4.01 4.47 0.00 3.96 3.11
11 4.00 4.77 3.19 3.98 4.17 4.11 3.97 4.07 4.33 3.96 0.00 4.16
12 3.80 4.56 3.83 3.04 3.06 4.08 3.35 4.24 4.48 3.11 4.16 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.56 0.59 0.58 0.56 0.61 0.62 0.55 0.52 0.59 0.56 0.55
2 0.56 1.00 0.53 0.54 0.49 0.60 0.53 0.60 0.58 0.52 0.53 0.51
3 0.59 0.53 1.00 0.57 0.58 0.53 0.56 0.53 0.52 0.56 0.59 0.55
4 0.58 0.54 0.57 1.00 0.61 0.56 0.60 0.51 0.49 0.62 0.57 0.58
5 0.56 0.49 0.58 0.61 1.00 0.53 0.55 0.50 0.49 0.63 0.53 0.62
6 0.61 0.60 0.53 0.56 0.53 1.00 0.58 0.58 0.56 0.55 0.53 0.52
7 0.62 0.53 0.56 0.60 0.55 0.58 1.00 0.52 0.51 0.59 0.53 0.56
8 0.55 0.60 0.53 0.51 0.50 0.58 0.52 1.00 0.61 0.53 0.53 0.47
9 0.52 0.58 0.52 0.49 0.49 0.56 0.51 0.61 1.00 0.52 0.51 0.48
10 0.59 0.52 0.56 0.62 0.63 0.55 0.59 0.53 0.52 1.00 0.56 0.58
11 0.56 0.53 0.59 0.57 0.53 0.53 0.53 0.53 0.51 0.56 1.00 0.51
12 0.55 0.51 0.55 0.58 0.62 0.52 0.56 0.47 0.48 0.58 0.51 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013