CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Apr-19 15:30:48 UTC
Project NameAPOPT1
SequenceMLPCAAGARG RGAMVVLRAG KKTFLPPLCR AFACRGCQLA PERGAERRDT APSGVSRFCP PRKSCHDWIG PPDKYSNLRP VHFYIPENES PLEQKLRKLR QETQEWNQQF WANQNLTFSK EKEEFIHSRL KTKGLGLRTE SGQKATLNAE EMADFYKEFL SKNFQKHMYY NRDWYKRNFA ITFFMGKVAL ERIWNKLKQK QKKRSN
Secondary structure

CCCCCCCCCC CCCCCCCCCC CCCCHHHHHH HCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CHHHHHCCCC CCCCCCCCCC CCCCCCCCCC CHHHHHHHHH HHHHHHCCCH HHHHHHHHHH HHHCHHHHHH HCCCCCCCCC CCCCCCHHHH HHHHHHHCCC CCCHHHHCCC CCHHHHHHCC HHHHHHHHHH HHHHHHHHHH HHHCCC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Apr-19 20:16 UTC
Project NameAPOPT1
Clustering data
Cluster #123456789101112
Cluster density160.8151.5115.6112.8106.2102.174.268.061.855.953.052.7
Cluster size2932722051842231811271071179910290
Average cluster RMSD1.81.81.81.62.11.81.71.61.91.81.91.7

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 10.50 11.80 12.30 11.50 10.40 10.40 11.90 10.40 8.95 10.10 8.01 8.75
GDT_TS 0.27 0.27 0.29 0.28 0.28 0.27 0.28 0.29 0.31 0.29 0.33 0.31

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 4.16 4.49 3.14 2.87 3.25 3.32 2.86 4.74 4.20 6.15 5.48
2 4.16 0.00 3.19 4.53 4.42 5.31 3.57 4.72 6.49 6.21 7.68 7.37
3 4.49 3.19 0.00 4.84 4.91 5.65 3.58 4.86 7.06 6.75 8.34 7.75
4 3.14 4.53 4.84 0.00 3.13 3.22 4.28 2.68 4.95 4.17 6.81 6.09
5 2.87 4.42 4.91 3.13 0.00 2.85 3.98 2.56 4.48 3.83 5.87 5.18
6 3.25 5.31 5.65 3.22 2.85 0.00 4.72 2.88 4.42 3.71 5.72 4.92
7 3.32 3.57 3.58 4.28 3.98 4.72 0.00 4.12 6.46 5.70 7.65 7.19
8 2.86 4.72 4.86 2.68 2.56 2.88 4.12 0.00 4.21 3.57 5.89 5.18
9 4.74 6.49 7.06 4.95 4.48 4.42 6.46 4.21 0.00 3.66 4.03 3.22
10 4.20 6.21 6.75 4.17 3.83 3.71 5.70 3.57 3.66 0.00 4.64 4.37
11 6.15 7.68 8.34 6.81 5.87 5.72 7.65 5.89 4.03 4.64 0.00 3.48
12 5.48 7.37 7.75 6.09 5.18 4.92 7.19 5.18 3.22 4.37 3.48 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.55 0.52 0.62 0.67 0.58 0.59 0.64 0.51 0.55 0.40 0.45
2 0.55 1.00 0.60 0.50 0.54 0.46 0.63 0.52 0.43 0.44 0.36 0.36
3 0.52 0.60 1.00 0.47 0.52 0.42 0.65 0.50 0.42 0.42 0.36 0.38
4 0.62 0.50 0.47 1.00 0.64 0.60 0.49 0.64 0.49 0.53 0.36 0.39
5 0.67 0.54 0.52 0.64 1.00 0.65 0.56 0.74 0.54 0.59 0.42 0.46
6 0.58 0.46 0.42 0.60 0.65 1.00 0.47 0.66 0.51 0.58 0.41 0.46
7 0.59 0.63 0.65 0.49 0.56 0.47 1.00 0.54 0.42 0.43 0.35 0.36
8 0.64 0.52 0.50 0.64 0.74 0.66 0.54 1.00 0.55 0.61 0.40 0.46
9 0.51 0.43 0.42 0.49 0.54 0.51 0.42 0.55 1.00 0.60 0.51 0.59
10 0.55 0.44 0.42 0.53 0.59 0.58 0.43 0.61 0.60 1.00 0.49 0.53
11 0.40 0.36 0.36 0.36 0.42 0.41 0.35 0.40 0.51 0.49 1.00 0.60
12 0.45 0.36 0.38 0.39 0.46 0.46 0.36 0.46 0.59 0.53 0.60 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013