CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Feb-16 06:19:12 UTC
Project NameRU-md
SequenceMKLTPKELDK LMLHYAGELA KKRKEKGIKL NYVEAVALIS AHIMEEARAG KKTAAELMQE GRTLLKPDDV MDGVASMIHE VGIEAMFPDG TKLVTVHTPI EANGKLVPGE LFLKNEDITI NEGKKAVSVK VKNVGDRPVQ IGSHFHFFEV NRCLDFDREK TFGKRLDIAA GTAVRFEPGE EKSVELIDIG GNRRIFGFNA LVDRQADNES KKIALHRAKE RGFHGAKSDD NYVKTIKE
Secondary structure

CCCCHHHHHH HHHHHHHHHH HHHHHCCCCC CHHHHHHHHH HHHHHHHHHC CCCHHHHHHH CCCCCCCCCC CCCHHHHCCE EEEEEEECCE EEEEEEECCC CCCCCCCCCC CCCCCCCCCC CCCCCCCEEE EEECCCCCEE EECCCCCCCC CCCEECCCCC CCCEEECCCC CCEEEECCCC EEEEEEEECC CCCEECCCCC CCCEECCHHH HHHHHHHHHH HCCCCCCCCC CCCCCCCC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Feb-16 10:09 UTC
Project NameRU-md
Clustering data
Cluster #123456789101112
Cluster density178.0140.8139.7124.772.065.961.159.257.154.237.329.9
Cluster size3372882912371401281231071031157358
Average cluster RMSD1.92.02.11.91.91.92.01.81.82.12.01.9

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 5.62 4.88 4.67 5.66 5.58 4.55 5.21 4.12 5.11 4.52 4.95 3.45
GDT_TS 0.51 0.51 0.52 0.47 0.45 0.53 0.50 0.57 0.47 0.54 0.51 0.59

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 3.34 3.58 2.28 3.93 3.80 3.32 4.41 4.30 4.12 3.25 5.18
2 3.34 0.00 2.01 3.03 3.56 3.23 2.60 3.72 3.55 3.42 2.93 4.32
3 3.58 2.01 0.00 3.25 3.48 3.01 2.69 3.59 3.42 2.90 3.15 4.27
4 2.28 3.03 3.25 0.00 3.35 3.71 2.91 4.41 4.12 4.04 3.32 5.31
5 3.93 3.56 3.48 3.35 0.00 3.72 3.64 4.67 3.09 3.86 4.03 5.34
6 3.80 3.23 3.01 3.71 3.72 0.00 3.17 3.29 3.99 2.83 3.68 3.84
7 3.32 2.60 2.69 2.91 3.64 3.17 0.00 4.21 4.22 3.40 2.73 4.91
8 4.41 3.72 3.59 4.41 4.67 3.29 4.21 0.00 3.79 3.71 3.65 3.19
9 4.30 3.55 3.42 4.12 3.09 3.99 4.22 3.79 0.00 3.63 3.74 4.46
10 4.12 3.42 2.90 4.04 3.86 2.83 3.40 3.71 3.63 0.00 3.49 3.88
11 3.25 2.93 3.15 3.32 4.03 3.68 2.73 3.65 3.74 3.49 0.00 4.14
12 5.18 4.32 4.27 5.31 5.34 3.84 4.91 3.19 4.46 3.88 4.14 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.59 0.58 0.71 0.61 0.60 0.60 0.57 0.59 0.58 0.64 0.53
2 0.59 1.00 0.82 0.62 0.61 0.59 0.70 0.60 0.61 0.64 0.65 0.52
3 0.58 0.82 1.00 0.61 0.61 0.61 0.70 0.62 0.63 0.66 0.64 0.54
4 0.71 0.62 0.61 1.00 0.65 0.57 0.62 0.57 0.62 0.59 0.62 0.49
5 0.61 0.61 0.61 0.65 1.00 0.57 0.61 0.55 0.73 0.58 0.61 0.52
6 0.60 0.59 0.61 0.57 0.57 1.00 0.64 0.70 0.56 0.72 0.64 0.62
7 0.60 0.70 0.70 0.62 0.61 0.64 1.00 0.61 0.60 0.67 0.77 0.53
8 0.57 0.60 0.62 0.57 0.55 0.70 0.61 1.00 0.55 0.67 0.62 0.66
9 0.59 0.61 0.63 0.62 0.73 0.56 0.60 0.55 1.00 0.58 0.63 0.51
10 0.58 0.64 0.66 0.59 0.58 0.72 0.67 0.67 0.58 1.00 0.66 0.60
11 0.64 0.65 0.64 0.62 0.61 0.64 0.77 0.62 0.63 0.66 1.00 0.56
12 0.53 0.52 0.54 0.49 0.52 0.62 0.53 0.66 0.51 0.60 0.56 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013