CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Jan-10 15:59:32 UTC
Project NameVA10C17F
SequenceHHHHHHVVKF MDVYQRSYCH PIETLVDIFQ EYPDEIEYIF KPSCVPLMRC GGCCNDEGLE CVPTEESNIT MQIMRIKPHQ GQHIGEMSFL QHNKCECRPK SSGGSGGGSG TPQNITDLCA EYHNTQIHTL NDKIFSYTES LAGKREMAII TFKNGATFQV EVPGSQHIDS QKKAIERMKD TLRIAYLTEA KVEKLCVWNN KTPHAIAAIS MANSSGGSGG GSGGGGSGGG PALPEDGGSG AFPPGHFKDP KRLYCKNGGF FLRIHPDGRV DGVREKSDPH IKLQLQAEER GVVSIKGVCA NRYLAMKEDG RLLASKCVTD ECFFFERLES NNYNTYRSRK YTSWYVALKR TGQYKLGSKT GPGQKAILFL PMSAKS
Secondary structure

CCCCCCCCCH HHHHHHHCCE EEEEEEEHHH HCCCCCCCEE CCCEEEEEEE ECCCCCCCCE EEEEEEECCE EEEEEECCCC CCCEEEEECC EEEEEEEECC CCCCCCCCCC CCCCHHHHHH CCCCEEEECC CEECCEEEEE EECCEEEEEE ECCCCCEEEC CCCCCCCCCC CHHHHHHHHH HHHHHHHHCC EEEEEEEECC CCCEEEEEEE ECCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC EEEEECCCCC EEEECCCCCE EEECCCCCCC CCEEEECCCC CEEEEEECCC CCCCCCCCCC CCCCCCCCCC CCEEEEEECC CCCEEEEECC CCCCCCCCCC CCCCCCCCCC CCCCCCCCEE EEECCC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Jan-10 20:08 UTC
Project NameVA10C17F
Clustering data
Cluster #123456789101112
Cluster density144.1121.3110.1102.096.894.693.387.765.854.852.451.4
Cluster size2782352121931851801641601071009888
Average cluster RMSD1.91.91.91.91.91.91.81.81.61.81.91.7

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 5.44 5.45 5.58 5.61 5.10 5.38 6.01 4.57 6.90 29.60 4.24 6.20
GDT_TS 0.52 0.50 0.49 0.51 0.48 0.48 0.50 0.52 0.47 0.39 0.50 0.48

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 3.41 2.89 3.35 4.75 5.14 3.62 3.52 3.96 29.70 4.59 3.74
2 3.41 0.00 3.43 3.62 3.89 4.59 4.40 2.85 4.61 29.40 4.10 4.24
3 2.89 3.43 0.00 3.48 4.49 5.17 3.65 3.51 4.01 29.80 4.77 3.99
4 3.35 3.62 3.48 0.00 4.76 5.17 3.09 4.12 3.58 29.20 4.74 2.53
5 4.75 3.89 4.49 4.76 0.00 3.01 5.41 3.74 5.63 30.00 3.62 5.18
6 5.14 4.59 5.17 5.17 3.01 0.00 5.92 4.22 5.92 30.40 3.84 5.56
7 3.62 4.40 3.65 3.09 5.41 5.92 0.00 4.65 2.63 29.30 5.26 3.18
8 3.52 2.85 3.51 4.12 3.74 4.22 4.65 0.00 4.98 30.00 3.67 4.72
9 3.96 4.61 4.01 3.58 5.63 5.92 2.63 4.98 0.00 29.30 5.71 3.29
10 29.70 29.40 29.80 29.20 30.00 30.40 29.30 30.00 29.30 0.00 30.00 29.50
11 4.59 4.10 4.77 4.74 3.62 3.84 5.26 3.67 5.71 30.00 0.00 5.32
12 3.74 4.24 3.99 2.53 5.18 5.56 3.18 4.72 3.29 29.50 5.32 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.60 0.64 0.63 0.58 0.56 0.56 0.59 0.57 0.42 0.58 0.56
2 0.60 1.00 0.60 0.60 0.59 0.55 0.54 0.65 0.54 0.43 0.57 0.55
3 0.64 0.60 1.00 0.61 0.60 0.56 0.59 0.59 0.60 0.41 0.54 0.56
4 0.63 0.60 0.61 1.00 0.55 0.53 0.65 0.55 0.62 0.41 0.54 0.68
5 0.58 0.59 0.60 0.55 1.00 0.62 0.55 0.59 0.58 0.47 0.59 0.54
6 0.56 0.55 0.56 0.53 0.62 1.00 0.53 0.55 0.55 0.43 0.60 0.50
7 0.56 0.54 0.59 0.65 0.55 0.53 1.00 0.53 0.71 0.41 0.52 0.63
8 0.59 0.65 0.59 0.55 0.59 0.55 0.53 1.00 0.53 0.47 0.58 0.51
9 0.57 0.54 0.60 0.62 0.58 0.55 0.71 0.53 1.00 0.44 0.54 0.63
10 0.42 0.43 0.41 0.41 0.47 0.43 0.41 0.47 0.44 1.00 0.42 0.37
11 0.58 0.57 0.54 0.54 0.59 0.60 0.52 0.58 0.54 0.42 1.00 0.49
12 0.56 0.55 0.56 0.68 0.54 0.50 0.63 0.51 0.63 0.37 0.49 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013