CABS-flex server
Download models Download Cα trajectory
Status: Done started: 2018-Apr-06 10:20:20 UTC
Project Name5
SequenceGLLSVLGSVA KHVLPHVVPV IAEHL
Secondary structure

CCCCCCCCCH HHHHHHHHHH HHHHC

Movie from predicted structures
To download the movie, right click on the desired file format:
Estimated finish time2018-Apr-06 14:42 UTC
Project Name5
Clustering data
Cluster #123456789101112
Cluster density327.1320.0294.0223.9207.8193.7145.8103.692.681.019.518.8
Cluster size304295262210235173167104109922227
Average cluster RMSD0.90.90.90.91.10.91.11.01.21.11.11.4

Read about clustering method.

Cα RMSD & GDT_TS to the input structure
#123456789101112
RMSD 4.06 4.23 3.90 4.53 5.21 4.64 4.74 4.22 3.27 3.97 3.02 3.90
GDT_TS 0.68 0.72 0.70 0.69 0.60 0.66 0.63 0.68 0.69 0.64 0.75 0.66

The table contains RMSD and GDT_TS values (calculated on the Cα atoms) between the predicted models and the input structure. Note that GDT_TS metric is intended as a more accurate measurement than the more common RMSD.
Read more about the root-mean-square deviation (RMSD) measure
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.

Cα RMSD between predicted models
#123456789101112
1 0.00 0.84 0.61 1.08 2.36 1.59 1.84 1.58 1.83 0.96 3.03 2.51
2 0.84 0.00 0.80 0.89 2.36 1.53 1.82 1.55 2.31 1.51 3.42 2.85
3 0.61 0.80 0.00 1.21 2.61 1.76 2.09 1.67 1.91 1.24 3.01 2.62
4 1.08 0.89 1.21 0.00 2.02 1.43 1.70 1.64 2.71 1.74 3.89 3.02
5 2.36 2.36 2.61 2.02 0.00 1.42 1.24 1.81 3.52 2.69 4.68 2.82
6 1.59 1.53 1.76 1.43 1.42 0.00 0.84 0.90 2.83 2.00 3.95 2.58
7 1.84 1.82 2.09 1.70 1.24 0.84 0.00 1.15 2.84 2.04 4.02 2.59
8 1.58 1.55 1.67 1.64 1.81 0.90 1.15 0.00 2.42 1.84 3.46 2.20
9 1.83 2.31 1.91 2.71 3.52 2.83 2.84 2.42 0.00 1.32 1.56 2.29
10 0.96 1.51 1.24 1.74 2.69 2.00 2.04 1.84 1.32 0.00 2.66 2.34
11 3.03 3.42 3.01 3.89 4.68 3.95 4.02 3.46 1.56 2.66 0.00 3.03
12 2.51 2.85 2.62 3.02 2.82 2.58 2.59 2.20 2.29 2.34 3.03 0.00

The table contains RMSD values (calculated on the Cα atoms) between the predicted models.
Read more about the root-mean-square deviation (RMSD) measure.

Cα GDT_TS between predicted models
#123456789101112
1 1.00 0.94 0.98 0.96 0.87 0.96 0.94 0.93 0.90 0.94 0.81 0.84
2 0.94 1.00 0.96 0.94 0.85 0.94 0.91 0.92 0.87 0.89 0.79 0.82
3 0.98 0.96 1.00 0.91 0.86 0.95 0.88 0.95 0.89 0.89 0.82 0.83
4 0.96 0.94 0.91 1.00 0.92 0.94 0.91 0.88 0.85 0.87 0.79 0.79
5 0.87 0.85 0.86 0.92 1.00 0.90 0.91 0.83 0.72 0.81 0.70 0.77
6 0.96 0.94 0.95 0.94 0.90 1.00 0.95 0.94 0.84 0.90 0.77 0.81
7 0.94 0.91 0.88 0.91 0.91 0.95 1.00 0.92 0.81 0.89 0.74 0.82
8 0.93 0.92 0.95 0.88 0.83 0.94 0.92 1.00 0.87 0.88 0.78 0.87
9 0.90 0.87 0.89 0.85 0.72 0.84 0.81 0.87 1.00 0.90 0.87 0.89
10 0.94 0.89 0.89 0.87 0.81 0.90 0.89 0.88 0.90 1.00 0.77 0.87
11 0.81 0.79 0.82 0.79 0.70 0.77 0.74 0.78 0.87 0.77 1.00 0.81
12 0.84 0.82 0.83 0.79 0.77 0.81 0.82 0.87 0.89 0.87 0.81 1.00

The table contains GDT_TS values (calculated on the Cα atoms) between the predicted models.
Read more about the global distance test (GDT, also written as GDT_TS to represent "total score") measure.


 

© Laboratory of Theory of Biopolymers, Faculty of Chemistry, University of Warsaw 2013